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See other APOE GE Assays ›
Gene Symbol:
Apoe
Gene Name:
apolipoprotein E
Gene Aliases:
APOEA
Chromosome Location:
Chr.1: 80612894 - 80616820 on Build Rnor_6.0
Species:
Rat
Species Specific ID (Flybase ID):
-
Assay ID Rn04219668_g1
Size
Availability Inventoried
Catalog # 4331182
Price 244.00
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Online offer: 200.00
200.0
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  • Genomic Map
  • Assay Details
  • More Information

Genomic Map

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Assay Details

Gene Symbol: Apoe
Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Amplicon Length
RefSeq NM_001270681.1 NP_001257610.1 3 - 4 352 98
NM_001270682.1 NP_001257611.1 3 - 4 331 98
NM_001270683.1 NP_001257612.1 3 - 4 318 98
NM_001270684.1 NP_001257613.1 3 - 4 294 98
NM_138828.3 NP_620183.2 3 - 4 312 98
GenBank mRNA BC060313.1 - 3 - 4 285 6919048 98
BC086581.1 - 3 - 4 255 7307758 98
FQ209426.1 - 3 - 4 283 98
FQ209457.1 - 3 - 4 280 98
FQ209625.1 - 3 - 4 281 98
FQ209879.1 - 2 - 3 228 98
FQ209926.1 - 3 - 4 281 98
FQ210262.1 - 3 - 4 281 98
FQ210410.1 - 3 - 4 281 98
FQ211250.1 - 3 - 4 282 98
FQ212760.1 - 3 - 4 281 98
FQ212769.1 - 3 - 4 281 98
FQ213060.1 - 3 - 4 277 98
FQ213396.1 - 3 - 4 277 98
FQ213533.1 - 3 - 4 284 98
FQ213898.1 - 3 - 4 273 98
FQ214072.1 - 3 - 4 281 98
FQ214282.1 - 3 - 4 281 98
FQ218386.1 - 3 - 4 280 98
FQ218473.1 - 3 - 4 310 98
FQ218485.1 - 3 - 4 281 98
FQ218540.1 - 3 - 4 281 98
FQ218699.1 - 3 - 4 283 98
FQ218898.1 - 3 - 4 283 98
FQ218953.1 - 2 - 3 337 98
FQ219009.1 - 3 - 4 281 98
FQ219124.1 - 2 - 3 241 98
FQ219144.1 - 3 - 4 281 98
FQ219202.1 - 2 - 3 232 98
FQ219319.1 - 3 - 4 281 98
FQ219432.1 - 3 - 4 281 98
FQ219448.1 - 3 - 4 283 98
FQ219490.1 - 3 - 4 281 98
FQ219516.1 - 3 - 4 281 98
FQ219534.1 - 3 - 4 281 98
FQ219700.1 - 3 - 4 281 98
FQ219711.1 - 3 - 4 281 98
FQ220125.1 - 3 - 4 277 98
FQ220532.1 - 3 - 4 277 98
FQ220683.1 - 3 - 4 281 98
FQ220752.1 - 3 - 4 312 98
FQ220879.1 - 3 - 4 285 98
FQ221856.1 - 3 - 4 281 98
FQ229186.1 - 3 - 4 281 98
FQ229530.1 - 2 - 3 232 98
FQ229565.1 - 3 - 4 277 98
FQ229759.1 - 3 - 4 281 98
FQ229950.1 - 3 - 4 281 98
FQ230084.1 - 3 - 4 281 98
FQ231375.1 - 3 - 4 310 98
J00705.1 - 2 - 3 239 98

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More Information


Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0100004935.rn.1

Set Membership:

Ambion siRNA available Amplicon length between 86 and 100 3' Most Mammalian Gene Collection Detect Genomic DNA Rattus norvegicus 1700 Inventoried Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Apoe

Panther Classification:

Molecular Function -

apolipoprotein

Gene Ontology Categories:

Function(s) Process(es)

negative regulation of endothelial cell proliferation
response to dietary excess
lipid metabolic process
triglyceride metabolic process
cholesterol biosynthetic process
cholesterol catabolic process
lipid transport
cellular calcium ion homeostasis
receptor-mediated endocytosis
response to oxidative stress
G-protein coupled receptor signaling pathway
nitric oxide mediated signal transduction
aging
protein localization
cholesterol metabolic process
regulation of gene expression
negative regulation of platelet activation
positive regulation of cholesterol esterification
positive regulation of cholesterol efflux
peripheral nervous system axon regeneration
long-chain fatty acid transport
protein import
triglyceride catabolic process
cGMP-mediated signaling
negative regulation of blood coagulation
positive regulation of cGMP biosynthetic process
neuron projection regeneration
axon regeneration
regulation of cholesterol transport
regulation of Cdc42 protein signal transduction
response to retinoic acid
positive regulation of low-density lipoprotein particle receptor catabolic process
response to insulin
cholesterol efflux
phospholipid efflux
very-low-density lipoprotein particle remodeling
low-density lipoprotein particle remodeling
high-density lipoprotein particle remodeling
high-density lipoprotein particle assembly
chylomicron remnant clearance
high-density lipoprotein particle clearance
very-low-density lipoprotein particle clearance
lipoprotein metabolic process
lipoprotein biosynthetic process
lipoprotein catabolic process
vasodilation
cholesterol homeostasis
positive regulation of catalytic activity
negative regulation of MAP kinase activity
negative regulation of neuron apoptotic process
negative regulation of blood vessel endothelial cell migration
reverse cholesterol transport
response to ethanol
negative regulation of cholesterol biosynthetic process
positive regulation of axon extension
positive regulation of lipid biosynthetic process
oligodendrocyte differentiation
artery morphogenesis
negative regulation of inflammatory response
positive regulation of nitric-oxide synthase activity
positive regulation of membrane protein ectodomain proteolysis
negative regulation of lipid biosynthetic process
maintenance of location in cell
lipid homeostasis
fatty acid homeostasis
positive regulation of dendritic spine development
negative regulation of dendritic spine development
cellular response to interleukin-1
cellular response to growth factor stimulus
cellular response to cholesterol
cardiovascular system development
negative regulation of cholesterol efflux
AMPA glutamate receptor clustering
NMDA glutamate receptor clustering
regulation of beta-amyloid clearance
regulation of neuron death
negative regulation of neuron death
positive regulation of neuron death
negative regulation of postsynaptic membrane organization
positive regulation of postsynaptic membrane organization
negative regulation of presynaptic membrane organization
positive regulation of presynaptic membrane organization
positive regulation of beta-amyloid formation
negative regulation of beta-amyloid formation
regulation of tau-protein kinase activity
negative regulation of dendritic spine maintenance
positive regulation of dendritic spine maintenance
positive regulation of phospholipid efflux
positive regulation of neurofibrillary tangle assembly
negative regulation of phospholipid efflux
negative regulation of lipid transport across blood brain barrier
positive regulation of lipid transport across blood brain barrier
beta-amyloid binding
receptor binding
lipid transporter activity
phospholipid binding
heparin binding
lipid binding
cholesterol binding
antioxidant activity
cholesterol transporter activity
identical protein binding
protein homodimerization activity
hydroxyapatite binding
metal chelating activity
tau protein binding
low-density lipoprotein particle receptor binding
phosphatidylcholine-sterol O-acyltransferase activator activity
very-low-density lipoprotein particle receptor binding
lipoprotein particle binding

MicroArray Probes:

Agilent Affymetrix ABI Illumina

Array Name Probe IDs Targets Target Type
Agilent Whole Rat Genome Microarray 4x44K v2 A_44_P171440 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 308935 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 13054 - -
Agilent SurePrint G3 Rat CGH Microarray 4x180K 81188 - -
Agilent Whole Rat Genome Microarray 4x44K v3 A_44_P171440 - -
Agilent Whole Rat Genome Microarray 4x44K v3 A_44_P171440 - -
Agilent SurePrint G3 Rat GE 8x60K Microarray A_44_P171440 - -
SurePrint G3 Rat Gene Expression Microarray G4131A A_44_P171440 - -
Agilent Rat Genome CGH Microarray 105A (G4436A) 84328 - -
Array Name Probe IDs Targets Target Type
Affymetrix Rat Gene 1.0 ST Array 10719533 - -
Affymetrix Rat Gene 1.0 ST Array 10719536 - -
Affymetrix Rat Gene 1.0 ST Array 10719532 - -
Affymetrix Rat Gene 1.0 ST Array 10719535 - -
Affymetrix Rat Gene 1.0 ST Array 10719534 - -
Affymetrix Rat Gene 1.0 ST Array 10719531 - -
Affymetrix Rat Gene 1.0 ST Array 10719537 - -
Affymetrix Rat Gene 1.1 ST Array 10719530 - -
Rat Genome 230 2.0 Array 1370862_at - -
Rat Genome 230 2.0 Array 1370862_PM_at - -
Rat Genome 230 2.0 Array 1371288_at - -
Rat Genome 230 2.0 Array 1371288_PM_at - -
Affymetrix HT Rat Focus Array 1370862_at - -
Affymetrix HT Rat Focus Array 1370862_PM_at - -
Affymetrix Rat Clariom S Assay PSR0100039020.rn.1 TC0100004935.rn.1 RTA TC
Affymetrix Rat Clariom S Assay PSR0100039019.rn.1 TC0100004935.rn.1 RTA TC
Rat Expression Set 230 1370862_PM_at - -
Rat Expression Set 230 1371288_at - -
Rat Expression Set 230 1370862_at - -
Rat Expression Set 230 1371288_PM_at - -
Affymetrix Rat Gene 1.0 ST Array 10719530 - -
Rat Genome U34 Set S76779_s_at - -
Rat Genome U34 Set X04979_at - -
Rat Genome U34 Set S76779_s_at - -
Rat Genome U34 Set X04979_at - -
Array Name Probe IDs Targets Target Type
ABI Rat Genome Survey Microarray 22181482 - -
Array Name Probe IDs Targets Target Type
Illumina ratRef-12 v1.0 expression beadchip ILMN_1367529 - -
RatRef-12 Expression BeadChip ILMN_69566 - -

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