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See other HDAC1L GE Assays ›
Gene Symbol:
Hdac1l
Gene Name:
histone deacetylase 1-like
Gene Aliases:
-
Chromosome Location:
Chr.9: 84893145 - 84894599 on Build Rnor_6.0
Species:
Rat
Species Specific ID (Flybase ID):
-
Assay ID Rn02114316_gH
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Catalog # 4331182
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  • Genomic Map
  • Assay Details
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Genomic Map

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Assay Details

Gene Symbol: Hdac1l
Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Amplicon Length
RefSeq NM_053446.1 NP_445898.1 1 1213 119
GenBank mRNA AF321129.1 - 1 535 119

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More Information


Additional Information:

Based on assay re-evaluation, this assay may detect genomic DNA. Please contact Tech Support if you need more information.

Set Membership:

Amplicon length greater than or equal to 101 3' Most Detect Genomic DNA Recommended Assay Rattus norvegicus 1700 Inventoried Both primers and probe map within a single exon

Gene Ontology Categories:

Function(s) Process(es)

negative regulation of transcription from RNA polymerase II promoter
transcription, DNA-templated
biological_process
positive regulation of cell proliferation
positive regulation of receptor biosynthetic process
circadian regulation of gene expression
ATP-dependent chromatin remodeling
negative regulation by host of viral transcription
negative regulation of transcription, DNA-templated
positive regulation of transcription from RNA polymerase II promoter
negative regulation of androgen receptor signaling pathway
histone H3-K9 modification
histone H3 deacetylation
histone H4 deacetylation
transcription regulatory region sequence-specific DNA binding
RNA polymerase II core promoter proximal region sequence-specific DNA binding
RNA polymerase II distal enhancer sequence-specific DNA binding
core promoter binding
RNA polymerase II repressing transcription factor binding
RNA polymerase II transcription corepressor activity
molecular_function
histone deacetylase activity
deacetylase activity
nucleosomal DNA binding
NAD-dependent histone deacetylase activity (H3-K14 specific)
activating transcription factor binding
histone deacetylase binding
NAD-dependent histone deacetylase activity (H3-K9 specific)
NAD-dependent histone deacetylase activity (H4-K16 specific)
NAD-dependent histone deacetylase activity (H3-K18 specific)

MicroArray Probes:

Affymetrix ABI Illumina

Array Name Probe IDs Targets Target Type
Rat Genome 230 2.0 Array 1396820_PM_at - -
Rat Genome 230 2.0 Array 1388761_PM_at - -
Rat Genome 230 2.0 Array 1396820_at - -
Rat Genome 230 2.0 Array 1388761_at - -
Affymetrix Rat Clariom S Assay PSR0900018878.rn.1 TC0900002309.rn.1 RTA TC
Rat Expression Set 230 1396820_at - -
Rat Expression Set 230 1396820_PM_at - -
Array Name Probe IDs Targets Target Type
ABI Rat Genome Survey Microarray 21070046 - -
Array Name Probe IDs Targets Target Type
Illumina ratRef-12 v1.0 expression beadchip ILMN_1376865 - -
Illumina ratRef-12 v1.0 expression beadchip ILMN_1376057 - -
RatRef-12 Expression BeadChip ILMN_53227 - -

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