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Gene Symbol:
Traf6
Gene Name:
TNF receptor-associated factor 6, E3 ubiquitin protein ligase
Gene Aliases:
-
Chromosome Location:
Chr.3: 91252829 - 91271607 on Build Rnor_6.0
Species:
Rat
Species Specific ID (Flybase ID):
-
Assay ID Rn01512911_m1
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Catalog # 4331182
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  • Genomic Map
  • Assay Details
  • More Information

Genomic Map

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Assay Details

Gene Symbol: Traf6
Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Amplicon Length
RefSeq NM_001107754.2 NP_001101224.1 6 - 7 946 58
GenBank mRNA BC168921.1 - 6 - 7 946 9024408 58

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More Information


Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0300001256.rn.1

Set Membership:

Amplicon length less than or equal to 70 Apoptosis 3' Most Mammalian Gene Collection Recommended Assay Rattus norvegicus Inventoried Probe spans exons

Panther Classification:

Molecular Function -

scaffold/adaptor protein

Gene Ontology Categories:

Function(s) Process(es)

negative regulation of transcription from RNA polymerase II promoter
protein polyubiquitination
ossification
neural tube closure
positive regulation of T cell cytokine production
protein complex assembly
immune response
signal transduction
I-kappaB kinase/NF-kappaB signaling
activation of NF-kappaB-inducing kinase activity
JNK cascade
organ morphogenesis
protein ubiquitination
cytokine-mediated signaling pathway
antigen processing and presentation of exogenous peptide antigen via MHC class II
osteoclast differentiation
positive regulation of lipopolysaccharide-mediated signaling pathway
activation of protein kinase activity
positive regulation of interleukin-2 production
T-helper 1 type immune response
positive regulation of T cell proliferation
odontogenesis of dentin-containing tooth
regulation of apoptotic process
myeloid dendritic cell differentiation
positive regulation of I-kappaB kinase/NF-kappaB signaling
positive regulation of JUN kinase activity
positive regulation of interleukin-12 biosynthetic process
positive regulation of interleukin-6 biosynthetic process
bone resorption
positive regulation of osteoclast differentiation
negative regulation of transcription, DNA-templated
positive regulation of transcription from RNA polymerase II promoter
bone remodeling
cell development
positive regulation of smooth muscle cell proliferation
T cell receptor signaling pathway
regulation of immunoglobulin secretion
positive regulation of sequence-specific DNA binding transcription factor activity
positive regulation of NF-kappaB transcription factor activity
protein autoubiquitination
interleukin-1-mediated signaling pathway
protein K63-linked ubiquitination
response to interleukin-1
cellular response to lipopolysaccharide
positive regulation of transcription regulatory region DNA binding
ubiquitin-protein transferase activity
tumor necrosis factor receptor binding
zinc ion binding
ligase activity
protein kinase binding
mitogen-activated protein kinase kinase kinase binding
ubiquitin conjugating enzyme binding
ubiquitin protein ligase binding
thioesterase binding
histone deacetylase binding
protein kinase B binding
protein N-terminus binding
ubiquitin protein ligase activity

MicroArray Probes:

Agilent Affymetrix Illumina

Array Name Probe IDs Targets Target Type
Agilent Whole Rat Genome Microarray 4x44K v2 A_44_P433773 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 642280 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 771087 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 211312 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 943264 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 481812 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 331746 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 302775 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 778799 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 550318 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 183157 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 477570 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 49715 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 782305 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 111572 - -
Agilent SurePrint G3 Rat CGH Microarray 4x180K 135304 - -
Agilent SurePrint G3 Rat CGH Microarray 4x180K 10580 - -
Agilent Whole Rat Genome Microarray 4x44K v3 A_44_P433773 - -
Agilent Whole Rat Genome Microarray 4x44K v3 A_44_P433773 - -
Agilent SurePrint G3 Rat GE 8x60K Microarray A_44_P433773 - -
SurePrint G3 Rat Gene Expression Microarray G4131A A_44_P433773 - -
Array Name Probe IDs Targets Target Type
Affymetrix Rat Gene 1.0 ST Array 10838108 - -
Affymetrix Rat Gene 1.0 ST Array 10838103 - -
Affymetrix Rat Gene 1.0 ST Array 10838104 - -
Affymetrix Rat Gene 1.0 ST Array 10838106 - -
Affymetrix Rat Gene 1.0 ST Array 10838107 - -
Affymetrix Rat Gene 1.0 ST Array 10838105 - -
Affymetrix Rat Gene 1.1 ST Array 10838100 - -
Rat Genome 230 2.0 Array 1393809_PM_at - -
Rat Genome 230 2.0 Array 1393809_at - -
Affymetrix HT Rat Focus Array 1393809_at - -
Affymetrix HT Rat Focus Array 1393809_PM_at - -
Affymetrix Rat Clariom S Assay PSR0300008574.rn.1 TC0300001256.rn.1 RTA TC
Rat Expression Set 230 1393809_PM_at - -
Rat Expression Set 230 1393809_at - -
Affymetrix Rat Gene 1.0 ST Array 10838100 - -
Array Name Probe IDs Targets Target Type
Illumina ratRef-12 v1.0 expression beadchip ILMN_1353721 - -

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