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Gene Symbol:
Nkx2-1
Gene Name:
NK2 homeobox 1
Gene Aliases:
TTF1, Titf1
Chromosome Location:
Chr.6: 77418096 - 77423383 on Build Rnor_6.0
Species:
Rat
Species Specific ID (Flybase ID):
-
Assay ID Rn01512482_m1
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Catalog # 4331182
Price 244.00
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  • Genomic Map
  • Assay Details
  • More Information

Genomic Map

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Assay Details

Gene Symbol: Nkx2-1
Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Amplicon Length
RefSeq NM_013093.1 NP_037225.1 1 - 2 373 105
XM_006240116.2 XP_006240178.1 2 - 3 654 105
XM_006240117.2 XP_006240179.1 2 - 3 727 105
XM_006240118.2 XP_006240180.1 2 - 3 1238 105
GenBank mRNA AB894119.1 - 1 - 2 372 105
X53858.1 - 1 - 2 373 105

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More Information


Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0600002504.rn.1

Set Membership:

Amplicon length greater than or equal to 101 3' Most Recommended Assay Rattus norvegicus 1700 Inventoried Probe spans exons

Panther Classification:

Molecular Function -

homeodomain transcription factor

Gene Ontology Categories:

Function(s) Process(es)

negative regulation of transcription from RNA polymerase II promoter
neuron migration
regulation of blood volume by renin-angiotensin
transcription, DNA-templated
regulation of transcription, DNA-templated
regulation of transcription from RNA polymerase II promoter
transcription from RNA polymerase II promoter
phospholipid metabolic process
pattern specification process
axon guidance
brain development
endoderm development
circadian rhythm
locomotory behavior
feeding behavior
response to hormone
organ morphogenesis
positive regulation of gene expression
negative regulation of epithelial to mesenchymal transition
telencephalon development
globus pallidus development
hippocampus development
cerebral cortex cell migration
forebrain dorsal/ventral pattern formation
forebrain neuron fate commitment
forebrain neuron differentiation
cerebral cortex GABAergic interneuron differentiation
cerebral cortex neuron differentiation
pituitary gland development
telencephalon cell migration
lung development
negative regulation of cell migration
negative regulation of transforming growth factor beta receptor signaling pathway
thyroid gland development
forebrain development
developmental induction
response to lipopolysaccharide
Leydig cell differentiation
hyperosmotic salinity response
positive regulation of circadian rhythm
response to ethanol
negative regulation of transcription, DNA-templated
positive regulation of transcription, DNA-templated
positive regulation of transcription from RNA polymerase II promoter
development of primary female sexual characteristics
anatomical structure formation involved in morphogenesis
neuron fate commitment
oligodendrocyte differentiation
lung saccule development
epithelial tube branching involved in lung morphogenesis
Clara cell differentiation
Type II pneumocyte differentiation
RNA polymerase II regulatory region sequence-specific DNA binding
core promoter binding
intronic transcription regulatory region sequence-specific DNA binding
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
DNA binding
transcription factor activity, sequence-specific DNA binding
transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding
protein binding
enzyme binding
sequence-specific DNA binding
transcription regulatory region DNA binding

MicroArray Probes:

Agilent Affymetrix ABI Illumina

Array Name Probe IDs Targets Target Type
Agilent Whole Rat Genome Microarray 4x44K v2 A_42_P563276 - -
Agilent Whole Rat Genome Microarray 4x44K v2 A_64_P097669 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 783237 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 96343 - -
Agilent Whole Rat Genome Microarray 4x44K v3 A_42_P563276 - -
Agilent Whole Rat Genome Microarray 4x44K v3 A_64_P097669 - -
Agilent Whole Rat Genome Microarray 4x44K v3 A_64_P097669 - -
Agilent Whole Rat Genome Microarray 4x44K v3 A_42_P563276 - -
Agilent SurePrint G3 Rat GE 8x60K Microarray A_42_P563276 - -
Agilent SurePrint G3 Rat GE 8x60K Microarray A_64_P097669 - -
SurePrint G3 Rat Gene Expression Microarray G4131A A_44_P442931 - -
Matsumoto (Agilent Rat cDNA Microarray G4105A) 702134734 - -
Agilent Rat cDNA Microarray (G4105A) 702134734 - -
Array Name Probe IDs Targets Target Type
Affymetrix Rat Gene 1.0 ST Array 10890086 - -
Affymetrix Rat Gene 1.0 ST Array 10890085 - -
Affymetrix Rat Gene 1.1 ST Array 10890084 - -
Rat Genome 230 2.0 Array 1371010_PM_at - -
Rat Genome 230 2.0 Array 1371010_at - -
Affymetrix HT Rat Focus Array 1371010_at - -
Affymetrix HT Rat Focus Array 1371010_PM_at - -
Affymetrix Rat Clariom S Assay PSR0600017843.rn.1 TC0600002504.rn.1 RTA TC
Affymetrix Rat Clariom S Assay PSR0600017840.rn.1 TC0600002504.rn.1 RTA TC
Affymetrix Rat Clariom S Assay PSR0600017838.rn.1 TC0600002504.rn.1 RTA TC
Affymetrix Rat Clariom S Assay PSR0600017839.rn.1 TC0600002504.rn.1 RTA TC
Affymetrix Rat Clariom S Assay PSR0600017842.rn.1 TC0600002504.rn.1 RTA TC
Rat Expression Set 230 1371010_at - -
Rat Expression Set 230 1371010_PM_at - -
Affymetrix Rat Gene 1.0 ST Array 10890084 - -
Rat Genome U34 Set X53858_at - -
Rat Genome U34 Set D38035cds_s_at - -
Array Name Probe IDs Targets Target Type
ABI Rat Genome Survey Microarray 21387070 - -
Array Name Probe IDs Targets Target Type
Illumina ratRef-12 v1.0 expression beadchip ILMN_1359201 - -

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