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See other CALCA GE Assays ›
Gene Symbol:
Calca
Gene Name:
calcitonin-related polypeptide alpha
Gene Aliases:
CAL6, CGRP, Cal1, Calc, RATCAL6, calcitonin
Chromosome Location:
Chr.1: 184184018 - 184188938 on Build Rnor_6.0
Species:
Rat
Species Specific ID (Flybase ID):
-
Assay ID Rn01511356_g1
Size
Availability Made To Order
Catalog # 4351372
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  • Genomic Map
  • Assay Details
  • More Information

Genomic Map

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Assay Details

Gene Symbol: Calca
Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Amplicon Length
RefSeq NM_001033955.1 NP_001029127.1 4 - 5 535 121
NM_001033956.1 NP_001029128.1 4 - 5 511 121
GenBank mRNA AW523601.1 - 1 - 2 121
AY702025.1 - 1 - 2 171 121
CB746609.1 - 2 - 3 197 121
CF978038.1 - 4 - 5 517 121

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More Information


Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0100006458.rn.1

Set Membership:

Ambion siRNA available Amplicon length greater than or equal to 101 3' Most Detect Genomic DNA Rattus norvegicus 1700 Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Calca

Panther Classification:

Molecular Function -

peptide hormone

Gene Ontology Categories:

Function(s) Process(es)

endothelial cell proliferation
vasculature development
neurological system process involved in regulation of systemic arterial blood pressure
vasodilation of artery involved in baroreceptor response to increased systemic arterial blood pressure
regulation of heart rate
G-protein coupled receptor internalization
monocyte chemotaxis
protein phosphorylation
cellular calcium ion homeostasis
inflammatory response
leukocyte cell-cell adhesion
adenylate cyclase-activating G-protein coupled receptor signaling pathway
activation of adenylate cyclase activity
positive regulation of cytosolic calcium ion concentration
neuropeptide signaling pathway
neuromuscular junction development
embryo implantation
aging
feeding behavior
regulation of heart contraction
regulation of blood pressure
response to heat
negative regulation of calcium ion transport into cytosol
negative regulation of ossification
positive regulation of cAMP biosynthetic process
receptor internalization
negative regulation of neurological system process
activation of protein kinase activity
positive regulation of interleukin-1 alpha production
positive regulation of interleukin-8 production
vasodilation
endothelial cell migration
positive regulation of macrophage differentiation
negative regulation of osteoclast differentiation
positive regulation of adenylate cyclase activity
negative regulation of blood pressure
positive regulation of ossification
negative regulation of bone resorption
positive regulation of cell adhesion
negative regulation of transcription, DNA-templated
positive regulation of vasodilation
negative regulation of smooth muscle contraction
response to pain
detection of temperature stimulus involved in sensory perception of pain
regulation of cytosolic calcium ion concentration
positive regulation of cytosolic calcium ion concentration involved in phospholipase C-activating G-protein coupled signaling pathway
cellular response to tumor necrosis factor
cellular response to nerve growth factor stimulus
receptor binding
neuropeptide hormone activity
calcitonin receptor binding
protein complex binding
identical protein binding

MicroArray Probes:

Agilent Affymetrix ABI Illumina

Array Name Probe IDs Targets Target Type
Agilent Whole Rat Genome Microarray 4x44K v2 A_64_P018766 - -
Agilent Whole Rat Genome Microarray 4x44K v2 A_64_P018761 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 432336 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 672572 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 854850 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 383778 - -
Agilent SurePrint G3 Rat CGH Microarray 4x180K 176580 - -
Agilent Whole Rat Genome Microarray 4x44K v3 A_64_P018761 - -
Agilent Whole Rat Genome Microarray 4x44K v3 A_64_P018766 - -
Agilent Whole Rat Genome Microarray 4x44K v3 A_64_P018766 - -
Agilent Whole Rat Genome Microarray 4x44K v3 A_64_P018761 - -
Agilent SurePrint G3 Rat GE 8x60K Microarray A_64_P018766 - -
Agilent SurePrint G3 Rat GE 8x60K Microarray A_64_P018761 - -
SurePrint G3 Rat Gene Expression Microarray G4131A A_43_P11924 - -
SurePrint G3 Rat Gene Expression Microarray G4131A A_44_P106221 - -
Agilent Rat Genome CGH Microarray 105A (G4436A) 93498 - -
Agilent Rat Genome CGH Microarray 105A (G4436A) 57351 - -
Agilent Rat Genome CGH Microarray 105A (G4436A) 80126 - -
Array Name Probe IDs Targets Target Type
Affymetrix Rat Gene 1.0 ST Array 10725055 - -
Affymetrix Rat Gene 1.0 ST Array 10725056 - -
Affymetrix Rat Gene 1.0 ST Array 10725058 - -
Affymetrix Rat Gene 1.0 ST Array 10725052 - -
Affymetrix Rat Gene 1.0 ST Array 10725054 - -
Affymetrix Rat Gene 1.0 ST Array 10725053 - -
Affymetrix Rat Gene 1.0 ST Array 10725057 - -
Affymetrix Rat Gene 1.0 ST Array 10725059 - -
Affymetrix Rat Gene 1.1 ST Array 10725051 - -
Rat Genome 230 2.0 Array 1369116_PM_a_at - -
Rat Genome 230 2.0 Array 1370775_PM_a_at - -
Rat Genome 230 2.0 Array 1369116_a_at - -
Rat Genome 230 2.0 Array 1370775_a_at - -
Rat Genome 230 2.0 Array 1369117_PM_at - -
Rat Genome 230 2.0 Array 1369117_at - -
Affymetrix HT Rat Focus Array 1369117_PM_at - -
Affymetrix HT Rat Focus Array 1369116_a_at - -
Affymetrix HT Rat Focus Array 1370775_a_at - -
Affymetrix HT Rat Focus Array 1369117_at - -
Affymetrix HT Rat Focus Array 1369116_PM_a_at - -
Affymetrix HT Rat Focus Array 1370775_PM_a_at - -
Affymetrix Rat Clariom S Assay PSR0100050704.rn.1 TC0100006458.rn.1 RTA TC
Rat Expression Set 230 1369116_a_at - -
Rat Expression Set 230 1370775_a_at - -
Rat Expression Set 230 1370775_PM_a_at - -
Rat Expression Set 230 1369116_PM_a_at - -
Rat Expression Set 230 1369117_PM_at - -
Rat Expression Set 230 1369117_at - -
Affymetrix Rat Gene 1.0 ST Array 10725051 - -
Rat Genome U34 Set M11597_at - -
Array Name Probe IDs Targets Target Type
ABI Rat Genome Survey Microarray 20772146 - -
Array Name Probe IDs Targets Target Type
Illumina ratRef-12 v1.0 expression beadchip ILMN_1366705 - -
RatRef-12 Expression BeadChip ILMN_53892 - -

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