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Gene Symbol:
Tgfb1i1
Gene Name:
transforming growth factor beta 1 induced transcript 1
Gene Aliases:
Ara55, Hic-5
Chromosome Location:
Chr.1: 199664112 - 199670970 on Build Rnor_6.0
Species:
Rat
Species Specific ID (Flybase ID):
-
Assay ID Rn01511346_g1
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Catalog # 4331182
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  • Genomic Map
  • Assay Details
  • More Information

Genomic Map

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Assay Details

Gene Symbol: Tgfb1i1
Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Amplicon Length
RefSeq NM_001191840.1 NP_001178769.1 8 - 9 912 96
XM_006230349.2 XP_006230411.1 8 - 9 1762 96
XM_006230350.2 XP_006230412.1 8 - 9 884 96
XM_008759920.1 XP_008758142.1 7 - 8 1969 96
XM_008759921.1 XP_008758143.1 8 - 9 969 96
GenBank mRNA AF314960.1 - 4 - 5 492 96

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More Information


Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0100002680.rn.1

Set Membership:

Amplicon length between 86 and 100 Detect Genomic DNA Recommended Assay Rattus norvegicus 1700 Inventoried Probe spans exons

Panther Classification:

Molecular Function -

actin or actin-binding cytoskeletal protein

Gene Ontology Categories:

Function(s) Process(es)

response to heat
positive regulation of epithelial to mesenchymal transition
Wnt signaling pathway
morphogenesis of embryonic epithelium
positive regulation of transforming growth factor beta receptor signaling pathway
negative regulation of transforming growth factor beta receptor signaling pathway
ubiquitin-dependent SMAD protein catabolic process
epithelial cell differentiation
cell fate commitment
negative regulation of fat cell differentiation
positive regulation of transcription, DNA-templated
transcription coactivator activity
protein binding
zinc ion binding
Roundabout binding
androgen receptor binding
I-SMAD binding

MicroArray Probes:

Agilent Affymetrix ABI Illumina

Array Name Probe IDs Targets Target Type
Agilent Whole Rat Genome Microarray 4x44K v2 A_42_P662897 - -
Agilent Whole Rat Genome Microarray 4x44K v3 A_42_P662897 - -
Agilent Whole Rat Genome Microarray 4x44K v3 A_42_P662897 - -
Agilent SurePrint G3 Rat GE 8x60K Microarray A_42_P662897 - -
SurePrint G3 Rat Gene Expression Microarray G4131A A_42_P662897 - -
Agilent Rat Genome CGH Microarray 105A (G4436A) 29542 - -
Array Name Probe IDs Targets Target Type
Affymetrix Rat Gene 1.0 ST Array 10711372 - -
Affymetrix Rat Gene 1.0 ST Array 10711371 - -
Affymetrix Rat Gene 1.0 ST Array 10711375 - -
Affymetrix Rat Gene 1.0 ST Array 10711370 - -
Affymetrix Rat Gene 1.0 ST Array 10711374 - -
Affymetrix Rat Gene 1.0 ST Array 10711373 - -
Affymetrix Rat Gene 1.1 ST Array 10711364 - -
Rat Genome 230 2.0 Array 1370887_at - -
Rat Genome 230 2.0 Array 1370887_PM_at - -
Affymetrix HT Rat Focus Array 1370887_PM_at - -
Affymetrix HT Rat Focus Array 1370887_at - -
Affymetrix Rat Clariom S Assay PSR0100021003.rn.1 TC0100002680.rn.1 RTA TC
Affymetrix Rat Clariom S Assay PSR0100021007.rn.1 TC0100002680.rn.1 RTA TC
Affymetrix Rat Clariom S Assay PSR0100021005.rn.1 TC0100002680.rn.1 RTA TC
Affymetrix Rat Clariom S Assay PSR0100021004.rn.1 TC0100002680.rn.1 RTA TC
Rat Expression Set 230 1370887_at - -
Rat Expression Set 230 1370887_PM_at - -
Affymetrix Rat Gene 1.0 ST Array 10711364 - -
Rat Genome U34 Set rc_AA957362_at - -
Array Name Probe IDs Targets Target Type
ABI Rat Genome Survey Microarray 22011322 - -
Array Name Probe IDs Targets Target Type
Illumina ratRef-12 v1.0 expression beadchip ILMN_1355379 - -
RatRef-12 Expression BeadChip ILMN_59428 - -

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