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See other SMPD1 GE Assays ›
Gene Symbol:
Smpd1
Gene Name:
sphingomyelin phosphodiesterase 1, acid lysosomal
Gene Aliases:
-
Chromosome Location:
Chr.1: 170383682 - 170387525 on Build Rnor_6.0
Species:
Rat
Species Specific ID (Flybase ID):
-
Assay ID Rn01506464_g1
Best Coverage
Size
Availability Inventoried
Catalog # 4331182
Price 244.00
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Online offer: 200.00
200.0
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  • Genomic Map
  • Assay Details
  • More Information

Genomic Map

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Assay Details

Gene Symbol: Smpd1
Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Amplicon Length
RefSeq NM_001006997.1 NP_001006998.1 5 - 6 1569 71
GenBank mRNA BC083780.1 - 5 - 6 1569 7096039 71

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More Information


Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0100002282.rn.1

Set Membership:

Ambion siRNA available Amplicon length between 71 and 85 Mammalian Gene Collection Detect Genomic DNA Recommended Assay Rattus norvegicus 1700 Inventoried Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Smpd1

Panther Classification:

Molecular Function -

hydrolase phosphodiesterase metabolite interconversion enzyme

Gene Ontology Categories:

Function(s) Process(es)

sphingomyelin catabolic process
termination of signal transduction
positive regulation of protein dephosphorylation
response to cocaine
response to drug
positive regulation of apoptotic process
negative regulation of MAP kinase activity
ceramide biosynthetic process
molecular_function
sphingomyelin phosphodiesterase activity
hydrolase activity, acting on glycosyl bonds

MicroArray Probes:

Agilent Affymetrix ABI Illumina

Array Name Probe IDs Targets Target Type
Agilent Whole Rat Genome Microarray 4x44K v2 A_44_P137802 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 111451 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 723187 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 778295 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 424069 - -
Agilent Whole Rat Genome Microarray 4x44K v3 A_44_P137802 - -
Agilent Whole Rat Genome Microarray 4x44K v3 A_44_P137802 - -
Agilent SurePrint G3 Rat GE 8x60K Microarray A_44_P137802 - -
SurePrint G3 Rat Gene Expression Microarray G4131A A_44_P137802 - -
Agilent Rat Genome CGH Microarray 105A (G4436A) 18419 - -
Array Name Probe IDs Targets Target Type
Affymetrix Rat Gene 1.0 ST Array 10709580 - -
Affymetrix Rat Gene 1.0 ST Array 10709581 - -
Affymetrix Rat Gene 1.0 ST Array 10709579 - -
Affymetrix Rat Gene 1.0 ST Array 10709576 - -
Affymetrix Rat Gene 1.0 ST Array 10709577 - -
Affymetrix Rat Gene 1.0 ST Array 10709578 - -
Affymetrix Rat Gene 1.1 ST Array 10709575 - -
Rat Genome 230 2.0 Array 1388552_at - -
Rat Genome 230 2.0 Array 1388552_PM_at - -
Affymetrix HT Rat Focus Array 1388552_PM_at - -
Affymetrix HT Rat Focus Array 1388552_at - -
Affymetrix Rat Clariom S Assay PSR0100017389.rn.1 TC0100002282.rn.1 RTA TC
Rat Expression Set 230 1388552_PM_at - -
Rat Expression Set 230 1388552_at - -
Affymetrix Rat Gene 1.0 ST Array 10709575 - -
Rat Genome U34 Set rc_AI169302_at - -
Array Name Probe IDs Targets Target Type
ABI Rat Genome Survey Microarray 21403210 - -
Array Name Probe IDs Targets Target Type
Illumina ratRef-12 v1.0 expression beadchip ILMN_1354054 - -
RatRef-12 Expression BeadChip ILMN_51414 - -

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