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See other APOBEC1 GE Assays ›
Gene Symbol:
Apobec1
Gene Name:
apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1
Gene Aliases:
REPR
Chromosome Location:
Chr.4: 155386367 - 155414032 on Build Rnor_6.0
Species:
Rat
Species Specific ID (Flybase ID):
-
Assay ID Rn01492432_m1
Size
Availability Inventoried
Catalog # 4331182
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  • Genomic Map
  • Assay Details
  • More Information

Genomic Map

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Assay Details

Gene Symbol: Apobec1
Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Amplicon Length
RefSeq NM_012907.2 NP_037039.1 4 - 5 1058 109
XM_006237290.2 XP_006237352.1 5 - 6 1250 109
XM_006237291.2 XP_006237353.1 5 - 6 1306 109
XM_006237292.2 XP_006237354.1 5 - 6 827 109
XM_006237293.2 XP_006237355.1 5 - 6 982 109
XM_008763219.1 XP_008761441.1 5 - 6 897 109
XM_008763220.1 XP_008761442.1 5 - 6 766 109
GenBank mRNA BC085335.1 - 4 - 5 1058 7301703 109
L07114.1 - 4 - 5 594 109

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More Information


Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0400003691.rn.1

Set Membership:

Ambion siRNA available Amplicon length greater than or equal to 101 3' Most Mammalian Gene Collection Rattus norvegicus 1700 Inventoried Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Apobec1

Panther Classification:

Molecular Function -

RNA processing factor

Gene Ontology Categories:

Function(s) Process(es)

mRNA processing
response to osmotic stress
cytidine deamination
response to zinc ion
response to gamma radiation
cytidine to uridine editing
mRNA modification
cellular response to insulin stimulus
regulation of cell proliferation
lipoprotein metabolic process
lipoprotein biosynthetic process
response to drug
lipoprotein transport
response to ethanol
cytidine metabolic process
mRNA stabilization
response to calcium ion
defense response to virus
DNA cytosine deamination
DNA demethylation
negative regulation of methylation-dependent chromatin silencing
RNA binding
cytidine deaminase activity
cytosine deaminase activity
protein binding
zinc ion binding
AU-rich element binding

MicroArray Probes:

Agilent Affymetrix ABI Illumina

Array Name Probe IDs Targets Target Type
Agilent Whole Rat Genome Microarray 4x44K v2 A_64_P038107 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 147952 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 824087 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 443283 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 473038 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 138632 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 160968 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 542754 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 215735 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 924860 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 110802 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 827837 - -
Agilent SurePrint G3 Rat CGH Microarray 4x180K 8847 - -
Agilent SurePrint G3 Rat CGH Microarray 4x180K 121795 - -
Agilent Whole Rat Genome Microarray 4x44K v3 A_64_P038107 - -
Agilent Whole Rat Genome Microarray 4x44K v3 A_64_P038107 - -
Agilent SurePrint G3 Rat GE 8x60K Microarray A_64_P038107 - -
SurePrint G3 Rat Gene Expression Microarray G4131A A_42_P598412 - -
Matsumoto (Agilent Rat cDNA Microarray G4105A) 701620940 - -
Agilent Rat Genome CGH Microarray 105A (G4436A) 68789 - -
Agilent Rat Genome CGH Microarray 105A (G4436A) 22919 - -
Agilent Rat cDNA Microarray (G4105A) 701620940 - -
Array Name Probe IDs Targets Target Type
Affymetrix Rat Gene 1.0 ST Array 10865334 - -
Affymetrix Rat Gene 1.0 ST Array 10865330 - -
Affymetrix Rat Gene 1.0 ST Array 10865335 - -
Affymetrix Rat Gene 1.0 ST Array 10865331 - -
Affymetrix Rat Gene 1.0 ST Array 10865333 - -
Affymetrix Rat Gene 1.0 ST Array 10865332 - -
Affymetrix Rat Gene 1.1 ST Array 10865329 - -
Rat Genome 230 2.0 Array 1368270_at - -
Rat Genome 230 2.0 Array 1368270_PM_at - -
Affymetrix HT Rat Focus Array 1368270_PM_at - -
Affymetrix HT Rat Focus Array 1368270_at - -
Affymetrix Rat Clariom S Assay PSR0400026084.rn.1 TC0400003691.rn.1 RTA TC
Rat Expression Set 230 1368270_at - -
Rat Expression Set 230 1368270_PM_at - -
Affymetrix Rat Gene 1.0 ST Array 10865329 - -
Rat Genome U34 Set L07114_at - -
Array Name Probe IDs Targets Target Type
ABI Rat Genome Survey Microarray 21948276 - -
Array Name Probe IDs Targets Target Type
Illumina ratRef-12 v1.0 expression beadchip ILMN_1368847 - -
RatRef-12 Expression BeadChip ILMN_57819 - -

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