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See other APOBEC1 GE Assays ›
Gene Symbol:
Apobec1
Gene Name:
apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1
Gene Aliases:
REPR
Chromosome Location:
Chr.4: 155386367 - 155414032 on Build Rnor_6.0
Species:
Rat
Species Specific ID (Flybase ID):
-
Assay ID Rn01492431_m1
Size
Availability Made To Order
Catalog # 4351372
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  • Genomic Map
  • Assay Details
  • More Information

Genomic Map

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Assay Details

Gene Symbol: Apobec1
Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Amplicon Length
RefSeq NM_012907.2 NP_037039.1 2 - 3 534 101
XM_006237290.2 XP_006237352.1 3 - 4 726 101
XM_006237291.2 XP_006237353.1 3 - 4 782 101
XM_006237292.2 XP_006237354.1 3 - 4 303 101
XM_006237293.2 XP_006237355.1 3 - 4 458 101
XM_008763219.1 XP_008761441.1 3 - 4 373 101
XM_008763220.1 XP_008761442.1 3 - 4 242 101
GenBank mRNA BC085335.1 - 2 - 3 534 7301703 101
L07114.1 - 2 - 3 70 101

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More Information


Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0400003691.rn.1

Set Membership:

Ambion siRNA available Amplicon length greater than or equal to 101 Mammalian Gene Collection Rattus norvegicus Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Apobec1

Panther Classification:

Molecular Function -

RNA processing factor

Gene Ontology Categories:

Function(s) Process(es)

mRNA processing
response to osmotic stress
cytidine deamination
response to zinc ion
response to gamma radiation
cytidine to uridine editing
mRNA modification
cellular response to insulin stimulus
regulation of cell proliferation
lipoprotein metabolic process
lipoprotein biosynthetic process
response to drug
lipoprotein transport
response to ethanol
cytidine metabolic process
mRNA stabilization
response to calcium ion
defense response to virus
DNA cytosine deamination
DNA demethylation
negative regulation of methylation-dependent chromatin silencing
RNA binding
cytidine deaminase activity
cytosine deaminase activity
protein binding
zinc ion binding
AU-rich element binding

MicroArray Probes:

Affymetrix

Array Name Probe IDs Targets Target Type
Affymetrix Rat Clariom S Assay PSR0400026088.rn.1 TC0400003691.rn.1 RTA TC
Affymetrix Rat Clariom S Assay PSR0400026087.rn.1 TC0400003691.rn.1 RTA TC

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