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Gene Symbol:
Nfkbia
Gene Name:
nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha
Gene Aliases:
RL/IF-1
Chromosome Location:
Chr.6: 76267227 - 76270457 on Build Rnor_6.0
Species:
Rat
Species Specific ID (Flybase ID):
-
Assay ID Rn01473656_g1
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Catalog # 4351372
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  • Genomic Map
  • Assay Details
  • More Information

Genomic Map

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Assay Details

Gene Symbol: Nfkbia
Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Amplicon Length
RefSeq NM_001105720.2 NP_001099190.2 5 - 6 1018 79
GenBank mRNA BC166886.1 - 5 - 6 970 6890357 79
BF417507.1 - 1 - 2 79
CA509173.1 - 1 - 2 79
CB324027.1 - 1 - 2 79
FQ214065.1 - 3 - 4 466 79
FQ215246.1 - 5 - 6 970 79
FQ225350.1 - 5 - 6 965 79
FQ225877.1 - 5 - 6 968 79
FQ226288.1 - 5 - 6 968 79
FQ233200.1 - 5 - 6 968 79
FQ233557.1 - 5 - 6 970 79
FQ234262.1 - 5 - 6 971 79
X63594.1 - 5 - 6 948 79

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More Information


Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0600002478.rn.1

Set Membership:

Amplicon length between 71 and 85 Apoptosis 3' Most Mammalian Gene Collection Detect Genomic DNA Rattus norvegicus 1700 Probe spans exons

Gene Ontology Categories:

Function(s) Process(es)

protein import into nucleus, translocation
cytoplasmic sequestering of NF-kappaB
regulation of gene expression
negative regulation of macrophage derived foam cell differentiation
positive regulation of cholesterol efflux
negative regulation of lipid storage
lipopolysaccharide-mediated signaling pathway
negative regulation of NF-kappaB transcription factor activity
positive regulation of cellular protein metabolic process
response to muramyl dipeptide
response to lipopolysaccharide
toll-like receptor 4 signaling pathway
response to muscle stretch
regulation of cell proliferation
cytoplasmic sequestering of transcription factor
response to exogenous dsRNA
negative regulation of myeloid cell differentiation
negative regulation of Notch signaling pathway
positive regulation of transcription, DNA-templated
positive regulation of transcription from RNA polymerase II promoter
nucleotide-binding oligomerization domain containing 1 signaling pathway
nucleotide-binding oligomerization domain containing 2 signaling pathway
nuclear localization sequence binding
enzyme binding
heat shock protein binding
ubiquitin protein ligase binding
protein complex binding
identical protein binding
NF-kappaB binding

MicroArray Probes:

Agilent Affymetrix ABI Illumina

Array Name Probe IDs Targets Target Type
Agilent Whole Rat Genome Microarray 4x44K v2 A_44_P261450 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 393719 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 211591 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 286634 - -
Agilent SurePrint G3 Rat CGH Microarray 4x180K 126899 - -
Agilent Whole Rat Genome Microarray 4x44K v3 A_44_P261450 - -
Agilent Whole Rat Genome Microarray 4x44K v3 A_44_P261450 - -
Agilent SurePrint G3 Rat GE 8x60K Microarray A_44_P261450 - -
SurePrint G3 Rat Gene Expression Microarray G4131A A_44_P261444 - -
SurePrint G3 Rat Gene Expression Microarray G4131A A_44_P261450 - -
Matsumoto (Agilent Rat cDNA Microarray G4105A) 700695171 - -
Matsumoto (Agilent Rat cDNA Microarray G4105A) 700286231 - -
Agilent Rat cDNA Microarray (G4105A) 700286231 - -
Agilent Rat cDNA Microarray (G4105A) 700695171 - -
Array Name Probe IDs Targets Target Type
Affymetrix Rat Gene 1.0 ST Array 10890028 - -
Affymetrix Rat Gene 1.0 ST Array 10890027 - -
Affymetrix Rat Gene 1.0 ST Array 10890026 - -
Affymetrix Rat Gene 1.0 ST Array 10890030 - -
Affymetrix Rat Gene 1.0 ST Array 10890025 - -
Affymetrix Rat Gene 1.0 ST Array 10890029 - -
Affymetrix Rat Gene 1.1 ST Array 10890024 - -
Rat Genome 230 2.0 Array 1389538_PM_at - -
Rat Genome 230 2.0 Array 1389538_at - -
Affymetrix HT Rat Focus Array 1389538_PM_at - -
Affymetrix HT Rat Focus Array 1389538_at - -
Affymetrix Rat Clariom S Assay PSR0600017675.rn.1 TC0600002478.rn.1 RTA TC
Affymetrix Rat Clariom S Assay PSR0600017677.rn.1 TC0600002478.rn.1 RTA TC
Affymetrix Rat Clariom S Assay PSR0600017676.rn.1 TC0600002478.rn.1 RTA TC
Rat Expression Set 230 1389538_at - -
Rat Expression Set 230 1389538_PM_at - -
Affymetrix Rat Gene 1.0 ST Array 10890024 - -
Rat Genome U34 Set X63594cds_g_at - -
Rat Genome U34 Set X63594cds_at - -
Rat Genome U34 Set rc_AA801189_at - -
Rat Genome U34 Set rc_AI172447_at - -
Rat Genome U34 Set X63594cds_at - -
Rat Genome U34 Set X63594cds_g_at - -
Array Name Probe IDs Targets Target Type
ABI Rat Genome Survey Microarray 21214680 - -
Array Name Probe IDs Targets Target Type
Illumina ratRef-12 v1.0 expression beadchip ILMN_1356628 - -

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