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See other FOXA2 GE Assays ›
Gene Symbol:
Foxa2
Gene Name:
forkhead box A2
Gene Aliases:
Hnf3b
Chromosome Location:
Chr.3: 142383093 - 142387493 on Build Rnor_6.0
Species:
Rat
Species Specific ID (Flybase ID):
-
Assay ID Rn01415600_m1
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  • Genomic Map
  • Assay Details
  • More Information

Genomic Map

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Assay Details

Gene Symbol: Foxa2
Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Amplicon Length
RefSeq NM_012743.1 NP_036875.1 2 - 3 259 65
XM_006235139.2 XP_006235201.1 1 - 2 134 65
GenBank mRNA L09647.1 - 2 - 3 259 65

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More Information


Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0300001929.rn.1

Set Membership:

Ambion siRNA available Amplicon length less than or equal to 70 3' Most Recommended Assay Rattus norvegicus 1700 Inventoried Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Foxa2

Panther Classification:

Molecular Function -

winged helix/forkhead transcription factor

Gene Ontology Categories:

Function(s) Process(es)

positive regulation of transcription from RNA polymerase II promoter by glucose
negative regulation of transcription from RNA polymerase II promoter by glucose
in utero embryonic development
ectoderm formation
cell fate specification
transcription, DNA-templated
regulation of transcription, DNA-templated
regulation of transcription from RNA polymerase II promoter
transcription from RNA polymerase II promoter
pattern specification process
adult locomotory behavior
anatomical structure morphogenesis
anterior/posterior pattern specification
dorsal/ventral pattern formation
regulation of gene expression
negative regulation of epithelial to mesenchymal transition
chromatin modification
regulation of lipid metabolic process
regulation of steroid metabolic process
cell differentiation in hindbrain
dorsal/ventral neural tube patterning
signal transduction involved in regulation of gene expression
regulation of blood coagulation
lung development
endocrine pancreas development
somite rostral/caudal axis specification
response to insulin
negative regulation of glucokinase activity
positive regulation of embryonic development
negative regulation of sequence-specific DNA binding transcription factor activity
negative regulation of neuron differentiation
positive regulation of neuron differentiation
positive regulation of smoothened signaling pathway
positive regulation of transcription, DNA-templated
positive regulation of transcription from RNA polymerase II promoter
positive regulation of transcription from RNA polymerase III promoter
cell development
anatomical structure formation involved in morphogenesis
neuron fate specification
epithelial tube branching involved in lung morphogenesis
lung epithelial cell differentiation
regulation of insulin secretion involved in cellular response to glucose stimulus
connective tissue development
dopaminergic neuron differentiation
primitive streak formation
positive regulation of gastrulation
negative regulation of detection of glucose
RNA polymerase II core promoter proximal region sequence-specific DNA binding
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
transcriptional activator activity, RNA polymerase II distal enhancer sequence-specific binding
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
DNA binding
double-stranded DNA binding
transcription factor activity, sequence-specific DNA binding
transcription factor activity, RNA polymerase II distal enhancer sequence-specific binding
protein binding
transcription factor binding
kinase binding
protein domain specific binding
sequence-specific DNA binding
transcription regulatory region DNA binding
SMAD binding

MicroArray Probes:

Agilent Affymetrix ABI Illumina

Array Name Probe IDs Targets Target Type
Agilent Whole Rat Genome Microarray 4x44K v2 A_42_P637279 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 806063 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 95142 - -
Agilent Whole Rat Genome Microarray 4x44K v3 A_42_P637279 - -
Agilent Whole Rat Genome Microarray 4x44K v3 A_42_P637279 - -
Agilent SurePrint G3 Rat GE 8x60K Microarray A_42_P637279 - -
SurePrint G3 Rat Gene Expression Microarray G4131A A_42_P637279 - -
Agilent Rat Genome CGH Microarray 105A (G4436A) 47336 - -
Array Name Probe IDs Targets Target Type
Affymetrix Rat Gene 1.0 ST Array 10850524 - -
Affymetrix Rat Gene 1.0 ST Array 10850522 - -
Affymetrix Rat Gene 1.0 ST Array 10850523 - -
Affymetrix Rat Gene 1.1 ST Array 10850521 - -
Rat Genome 230 2.0 Array 1368711_at - -
Rat Genome 230 2.0 Array 1368711_PM_at - -
Affymetrix HT Rat Focus Array 1368711_at - -
Affymetrix HT Rat Focus Array 1368711_PM_at - -
Affymetrix Rat Clariom S Assay PSR0300013907.rn.1 TC0300001929.rn.1 RTA TC
Affymetrix Rat Clariom S Assay PSR0300013906.rn.1 TC0300001929.rn.1 RTA TC
Rat Expression Set 230 1368711_PM_at - -
Rat Expression Set 230 1368711_at - -
Affymetrix Rat Gene 1.0 ST Array 10850521 - -
Rat Genome U34 Set L09647_at - -
Array Name Probe IDs Targets Target Type
ABI Rat Genome Survey Microarray 21782750 - -
Array Name Probe IDs Targets Target Type
Illumina ratRef-12 v1.0 expression beadchip ILMN_1530196 - -
Illumina ratRef-12 v1.0 expression beadchip ILMN_1376893 - -
RatRef-12 Expression BeadChip ILMN_161603 - -

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