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Gene Symbol:
Pitx2
Gene Name:
paired-like homeodomain 2
Gene Aliases:
Pitx-2, Pitx2c, Ptx2
Chromosome Location:
Chr.2: 233602732 - 233621055 on Build Rnor_6.0
Species:
Rat
Species Specific ID (Flybase ID):
-
Assay ID Rn01316994_m1
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Catalog # 4331182
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  • Genomic Map
  • Assay Details
  • More Information

Genomic Map

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Assay Details

Gene Symbol: Pitx2
Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Amplicon Length
RefSeq NM_001042505.1 NP_001035970.1 2 - 3 755 58
NM_019334.2 NP_062207.1 3 - 4 456 58
GenBank mRNA AF039832.1 - 3 - 4 456 58
AJ222971.1 - 2 - 3 763 58
AJ222972.1 - 3 - 4 509 58
EF519321.1 - 2 - 3 245 58

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More Information


Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0200002176.rn.1

Set Membership:

Ambion siRNA available Amplicon length less than or equal to 70 3' Most Recommended Assay Rattus norvegicus 1700 Inventoried Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Pitx2

Panther Classification:

Molecular Function -

homeodomain transcription factor

Gene Ontology Categories:

Function(s) Process(es)

negative regulation of transcription from RNA polymerase II promoter
patterning of blood vessels
vasculogenesis
in utero embryonic development
neuron migration
extraocular skeletal muscle development
atrioventricular valve development
cardiac neural crest cell migration involved in outflow tract morphogenesis
pulmonary myocardium development
regulation of transcription, DNA-templated
regulation of transcription from RNA polymerase II promoter
transcription from RNA polymerase II promoter
determination of left/right symmetry
brain development
heart development
skeletal muscle tissue development
myoblast fusion
male gonad development
female gonad development
anatomical structure morphogenesis
response to hormone
organ morphogenesis
Wnt signaling pathway
subthalamic nucleus development
hypothalamus cell migration
pituitary gland development
neuron differentiation
lung development
regulation of cell migration
embryonic camera-type eye development
response to vitamin A
embryonic hindlimb morphogenesis
vascular smooth muscle cell differentiation
deltoid tuberosity development
regulation of cell proliferation
odontogenesis of dentin-containing tooth
odontogenesis
camera-type eye development
positive regulation of DNA binding
positive regulation of transcription, DNA-templated
positive regulation of transcription from RNA polymerase II promoter
spleen development
embryonic digestive tract morphogenesis
cardiac muscle tissue development
cardiac muscle cell differentiation
atrial cardiac muscle tissue morphogenesis
ventricular cardiac muscle cell development
digestive system development
ventricular septum morphogenesis
left lung morphogenesis
pulmonary vein morphogenesis
superior vena cava morphogenesis
endodermal digestive tract morphogenesis
iris morphogenesis
cell proliferation involved in outflow tract morphogenesis
left/right axis specification
positive regulation of myoblast proliferation
transcription regulatory region sequence-specific DNA binding
RNA polymerase II core promoter proximal region sequence-specific DNA binding
RNA polymerase II transcription factor activity, sequence-specific DNA binding
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding
RNA polymerase II transcription factor binding
RNA polymerase II activating transcription factor binding
RNA polymerase II transcription coactivator activity
transcriptional repressor activity, RNA polymerase II transcription factor binding
DNA binding
chromatin binding
transcription factor activity, sequence-specific DNA binding
transcription factor binding
chromatin DNA binding
identical protein binding
protein homodimerization activity
sequence-specific DNA binding
phosphoprotein binding

MicroArray Probes:

Agilent Affymetrix ABI Illumina

Array Name Probe IDs Targets Target Type
Agilent Whole Rat Genome Microarray 4x44K v2 A_64_P072648 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 512535 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 120346 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 385735 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 896757 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 938911 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 287663 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 314441 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 877262 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 704058 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 758388 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 434479 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 248368 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 913644 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 213265 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 492168 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 464687 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 314515 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 523503 - -
Agilent SurePrint G3 Rat CGH Microarray 4x180K 91667 - -
Agilent SurePrint G3 Rat CGH Microarray 4x180K 9075 - -
Agilent SurePrint G3 Rat CGH Microarray 4x180K 21436 - -
Agilent Whole Rat Genome Microarray 4x44K v3 A_64_P072648 - -
Agilent Whole Rat Genome Microarray 4x44K v3 A_64_P072648 - -
Agilent SurePrint G3 Rat GE 8x60K Microarray A_64_P072648 - -
SurePrint G3 Rat Gene Expression Microarray G4131A A_42_P718970 - -
Matsumoto (Agilent Rat cDNA Microarray G4105A) 702076272 - -
Agilent Rat Genome CGH Microarray 105A (G4436A) 74096 - -
Agilent Rat Genome CGH Microarray 105A (G4436A) 22760 - -
Agilent Rat cDNA Microarray (G4105A) 702076272 - -
Array Name Probe IDs Targets Target Type
Affymetrix Rat Gene 1.0 ST Array 10818994 - -
Affymetrix Rat Gene 1.0 ST Array 10818997 - -
Affymetrix Rat Gene 1.0 ST Array 10818995 - -
Affymetrix Rat Gene 1.0 ST Array 10818991 - -
Affymetrix Rat Gene 1.0 ST Array 10818993 - -
Affymetrix Rat Gene 1.0 ST Array 10818990 - -
Affymetrix Rat Gene 1.0 ST Array 10818996 - -
Affymetrix Rat Gene 1.1 ST Array 10818989 - -
Rat Genome 230 2.0 Array 1368785_PM_a_at - -
Rat Genome 230 2.0 Array 1368785_a_at - -
Affymetrix HT Rat Focus Array 1368785_a_at - -
Affymetrix HT Rat Focus Array 1368785_PM_a_at - -
Affymetrix Rat Clariom S Assay PSR0200015066.rn.1 TC0200002176.rn.1 RTA TC
Rat Expression Set 230 1368785_a_at - -
Rat Expression Set 230 1368785_PM_a_at - -
Affymetrix Rat Gene 1.0 ST Array 10818989 - -
Rat Genome U34 Set AF039832_g_at - -
Rat Genome U34 Set AF039832_at - -
Array Name Probe IDs Targets Target Type
ABI Rat Genome Survey Microarray 21740405 - -
Array Name Probe IDs Targets Target Type
Illumina ratRef-12 v1.0 expression beadchip ILMN_1369098 - -
RatRef-12 Expression BeadChip ILMN_64864 - -

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