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See other GGPS1 GE Assays ›
Gene Symbol:
Ggps1
Gene Name:
geranylgeranyl diphosphate synthase 1
Gene Aliases:
Crlf3, rGGPS1a, rGGPS1a1, rGGPS1a2, rGGPS1a3
Chromosome Location:
Chr.17: 53956185 - 53971039 on Build Rnor_6.0
Species:
Rat
Species Specific ID (Flybase ID):
-
Assay ID Rn01136020_gH
Best Coverage
Size
Availability Inventoried
Catalog # 4331182
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  • Genomic Map
  • Assay Details
  • More Information

Genomic Map

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Assay Details

Gene Symbol: Ggps1
Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Amplicon Length
RefSeq NM_001007626.2 NP_001007627.1 3 - 4 387 79
XM_008771698.1 XP_008769920.1 3 - 4 405 79
XM_008771699.1 XP_008769921.1 2 - 3 312 79
GenBank mRNA AB118238.1 - 3 - 4 373 79
AB118239.1 - 3 - 4 373 79
AB118240.1 - 3 - 4 373 79
AB118241.1 - 3 - 4 373 79
AB118242.1 - 3 - 4 373 79
AB118243.1 - 3 - 4 373 79
BC090327.1 - 3 - 4 387 7125199 79

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More Information


Additional Information:

This assay is in the 5'UTR region of the XM_008771699.1 transcripts.

Set Membership:

Ambion siRNA available Amplicon length between 71 and 85 3' Most Mammalian Gene Collection Detect Genomic DNA Recommended Assay Rattus norvegicus 1700 Inventoried Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Ggps1

Gene Ontology Categories:

Function(s) Process(es)

isoprenoid metabolic process
geranyl diphosphate biosynthetic process
geranylgeranyl diphosphate biosynthetic process
farnesyl diphosphate biosynthetic process
dimethylallyltranstransferase activity
farnesyltranstransferase activity
geranyltranstransferase activity
metal ion binding

MicroArray Probes:

Agilent Affymetrix ABI Illumina

Array Name Probe IDs Targets Target Type
Agilent Whole Rat Genome Microarray 4x44K v2 A_64_P026399 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 357317 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 341797 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 627184 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 965767 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 685 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 90244 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 281248 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 148588 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 773583 - -
Agilent SurePrint G3 Rat CGH Microarray 4x180K 18305 - -
Agilent SurePrint G3 Rat CGH Microarray 4x180K 147128 - -
Agilent Whole Rat Genome Microarray 4x44K v3 A_64_P026399 - -
Agilent Whole Rat Genome Microarray 4x44K v3 A_64_P026399 - -
Agilent SurePrint G3 Rat GE 8x60K Microarray A_64_P026399 - -
SurePrint G3 Rat Gene Expression Microarray G4131A A_44_P119296 - -
Agilent Rat Genome CGH Microarray 105A (G4436A) 28490 - -
Agilent Rat Genome CGH Microarray 105A (G4436A) 77780 - -
Array Name Probe IDs Targets Target Type
Affymetrix Rat Gene 1.0 ST Array 10795524 - -
Affymetrix Rat Gene 1.0 ST Array 10795525 - -
Affymetrix Rat Gene 1.0 ST Array 10795521 - -
Affymetrix Rat Gene 1.0 ST Array 10795523 - -
Affymetrix Rat Gene 1.0 ST Array 10795527 - -
Affymetrix Rat Gene 1.0 ST Array 10795522 - -
Affymetrix Rat Gene 1.0 ST Array 10795526 - -
Affymetrix Rat Gene 1.1 ST Array 10795520 - -
Rat Genome 230 2.0 Array 1380586_at - -
Rat Genome 230 2.0 Array 1380586_PM_at - -
Rat Genome 230 2.0 Array 1379556_PM_a_at - -
Rat Genome 230 2.0 Array 1379556_a_at - -
Rat Genome 230 2.0 Array 1377866_PM_a_at - -
Rat Genome 230 2.0 Array 1377866_a_at - -
Rat Genome 230 2.0 Array 1386215_at - -
Rat Genome 230 2.0 Array 1386215_PM_at - -
Affymetrix HT Rat Focus Array 1377866_PM_a_at - -
Affymetrix HT Rat Focus Array 1379556_PM_a_at - -
Affymetrix HT Rat Focus Array 1386215_PM_at - -
Affymetrix HT Rat Focus Array 1386215_at - -
Affymetrix HT Rat Focus Array 1379556_a_at - -
Affymetrix HT Rat Focus Array 1377866_a_at - -
Affymetrix Rat Clariom S Assay PSR1700005180.rn.1 TC1700000774.rn.1 RTA TC
Affymetrix Rat Clariom S Assay PSR1700005178.rn.1 TC1700000774.rn.1 RTA TC
Affymetrix Rat Clariom S Assay PSR1700005176.rn.1 TC1700000774.rn.1 RTA TC
Affymetrix Rat Clariom S Assay PSR1700005177.rn.1 TC1700000774.rn.1 RTA TC
Affymetrix Rat Clariom S Assay PSR1700005179.rn.1 TC1700000774.rn.1 RTA TC
Rat Expression Set 230 1379556_a_at - -
Rat Expression Set 230 1377866_a_at - -
Rat Expression Set 230 1386215_PM_at - -
Rat Expression Set 230 1380586_at - -
Rat Expression Set 230 1379556_PM_a_at - -
Rat Expression Set 230 1380586_PM_at - -
Rat Expression Set 230 1386215_at - -
Rat Expression Set 230 1377866_PM_a_at - -
Affymetrix Rat Gene 1.0 ST Array 10795520 - -
Rat Genome U34 Set rc_AI105210_at - -
Rat Genome U34 Set rc_AI232147_at - -
Rat Genome U34 Set rc_AI175248_at - -
Array Name Probe IDs Targets Target Type
ABI Rat Genome Survey Microarray 21058126 - -
Array Name Probe IDs Targets Target Type
Illumina ratRef-12 v1.0 expression beadchip ILMN_1349919 - -
RatRef-12 Expression BeadChip ILMN_50115 - -

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