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See other CALCA GE Assays ›
Gene Symbol:
Calca
Gene Name:
calcitonin-related polypeptide alpha
Gene Aliases:
CAL6, CGRP, Cal1, Calc, RATCAL6, calcitonin
Chromosome Location:
Chr.1: 184184018 - 184188938 on Build Rnor_6.0
Species:
Rat
Species Specific ID (Flybase ID):
-
Assay ID Rn00692433_s1
Size
Availability Inventoried
Catalog # 4331182
Price
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  • Genomic Map
  • Assay Details
  • More Information

Genomic Map

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Assay Details

Gene Symbol: Calca
Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Amplicon Length
RefSeq NM_017338.2 NP_059034.1 3 - 4 336 70
XM_008759676.1 XP_008757898.1 3 - 4 387 70
GenBank mRNA M26137.1 - 2 - 3 241 70
V01228.1 - 3 - 4 297 70
V01229.1 - 2 - 3 241 70

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More Information


Updated Mapping Information

Based on assay re-evaluation in August 2010 with NCBI transcript and genome annotations (Genome Build RGSC3.4), this assay is now annotated to be across exon-exon junction.

Set Membership:

Ambion siRNA available Amplicon length less than or equal to 70 3' Most Rattus norvegicus 1700 Inventoried Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Calca

Panther Classification:

Molecular Function -

peptide hormone

Gene Ontology Categories:

Function(s) Process(es)

endothelial cell proliferation
vasculature development
neurological system process involved in regulation of systemic arterial blood pressure
vasodilation of artery involved in baroreceptor response to increased systemic arterial blood pressure
regulation of heart rate
G-protein coupled receptor internalization
monocyte chemotaxis
protein phosphorylation
cellular calcium ion homeostasis
inflammatory response
leukocyte cell-cell adhesion
adenylate cyclase-activating G-protein coupled receptor signaling pathway
activation of adenylate cyclase activity
positive regulation of cytosolic calcium ion concentration
neuropeptide signaling pathway
neuromuscular junction development
embryo implantation
aging
feeding behavior
regulation of heart contraction
regulation of blood pressure
response to heat
negative regulation of calcium ion transport into cytosol
negative regulation of ossification
positive regulation of cAMP biosynthetic process
receptor internalization
negative regulation of neurological system process
activation of protein kinase activity
positive regulation of interleukin-1 alpha production
positive regulation of interleukin-8 production
vasodilation
endothelial cell migration
positive regulation of macrophage differentiation
negative regulation of osteoclast differentiation
positive regulation of adenylate cyclase activity
negative regulation of blood pressure
positive regulation of ossification
negative regulation of bone resorption
positive regulation of cell adhesion
negative regulation of transcription, DNA-templated
positive regulation of vasodilation
negative regulation of smooth muscle contraction
response to pain
detection of temperature stimulus involved in sensory perception of pain
regulation of cytosolic calcium ion concentration
positive regulation of cytosolic calcium ion concentration involved in phospholipase C-activating G-protein coupled signaling pathway
cellular response to tumor necrosis factor
cellular response to nerve growth factor stimulus
receptor binding
neuropeptide hormone activity
calcitonin receptor binding
protein complex binding
identical protein binding

MicroArray Probes:

Affymetrix ABI

Array Name Probe IDs Targets Target Type
Affymetrix Rat Clariom S Assay PSR0100050709.rn.1 TC0100006458.rn.1 RTA TC
Affymetrix Rat Clariom S Assay PSR0100050708.rn.1 TC0100006458.rn.1 RTA TC
Array Name Probe IDs Targets Target Type
ABI Rat Genome Survey Microarray 20772146 - -

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