Vdr
Genomic Map
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| Gene Symbol: Vdr | ||||||
|---|---|---|---|---|---|---|
| Interrogated Sequence | Translated Protein | Exon Boundary | Assay Location | IMAGE Clone ID | Amplicon Length | |
| RefSeq | NM_017058.1 | NP_058754.1 | 4 - 5 | 376 | 63 | |
| GenBank mRNA | J04147.1 | - | 4 - 5 | 376 | 63 | |
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Updated Mapping Information
This assay targets the same location as RTA transcript cluster(s) TC0700003827.rn.1Set Membership: |
Ambion siRNA available
Amplicon length less than or equal to 70
Nuclear Receptor
Recommended Assay
Rattus norvegicus
1700
Inventoried
Probe spans exons
|
Matching Ambion siRNAs:
Gene Ontology Categories:
Function(s)
Process(es)
negative regulation of transcription from RNA polymerase II promoter
cell morphogenesis
skeletal system development
transcription, DNA-templated
regulation of transcription, DNA-templated
regulation of transcription from RNA polymerase II promoter
transcription from RNA polymerase II promoter
calcium ion transport
cellular calcium ion homeostasis
multicellular organism development
heart development
aging
lactation
negative regulation of cell proliferation
organ morphogenesis
positive regulation of gene expression
negative regulation of keratinocyte proliferation
positive regulation of vitamin D 24-hydroxylase activity
intracellular receptor signaling pathway
response to estradiol
bile acid signaling pathway
steroid hormone mediated signaling pathway
positive regulation of keratinocyte differentiation
negative regulation of transcription, DNA-templated
positive regulation of transcription from RNA polymerase II promoter
decidualization
intestinal absorption
response to calcium ion
regulation of calcium ion transport
positive regulation of apoptotic process involved in mammary gland involution
regulation of calcidiol 1-monooxygenase activity
mammary gland branching involved in pregnancy
vitamin D receptor signaling pathway
cellular response to vitamin D
apoptotic signaling pathway
DNA binding
transcription factor activity, sequence-specific DNA binding
steroid hormone receptor activity
RNA polymerase II transcription factor activity, ligand-activated sequence-specific DNA binding
vitamin D binding
protein binding
zinc ion binding
calcitriol receptor activity
lithocholic acid receptor activity
sequence-specific DNA binding
retinoid X receptor binding
vitamin D response element binding
calcitriol binding
lithocholic acid binding
negative regulation of transcription from RNA polymerase II promoter
cell morphogenesis
skeletal system development
transcription, DNA-templated
regulation of transcription, DNA-templated
regulation of transcription from RNA polymerase II promoter
transcription from RNA polymerase II promoter
calcium ion transport
cellular calcium ion homeostasis
multicellular organism development
heart development
aging
lactation
negative regulation of cell proliferation
organ morphogenesis
positive regulation of gene expression
negative regulation of keratinocyte proliferation
positive regulation of vitamin D 24-hydroxylase activity
intracellular receptor signaling pathway
response to estradiol
bile acid signaling pathway
steroid hormone mediated signaling pathway
positive regulation of keratinocyte differentiation
negative regulation of transcription, DNA-templated
positive regulation of transcription from RNA polymerase II promoter
decidualization
intestinal absorption
response to calcium ion
regulation of calcium ion transport
positive regulation of apoptotic process involved in mammary gland involution
regulation of calcidiol 1-monooxygenase activity
mammary gland branching involved in pregnancy
vitamin D receptor signaling pathway
cellular response to vitamin D
apoptotic signaling pathway
DNA binding
transcription factor activity, sequence-specific DNA binding
steroid hormone receptor activity
RNA polymerase II transcription factor activity, ligand-activated sequence-specific DNA binding
vitamin D binding
protein binding
zinc ion binding
calcitriol receptor activity
lithocholic acid receptor activity
sequence-specific DNA binding
retinoid X receptor binding
vitamin D response element binding
calcitriol binding
lithocholic acid binding
MicroArray Probes:
Agilent
Affymetrix
ABI
Illumina
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Agilent Whole Rat Genome Microarray 4x44K v2 | A_64_P149930 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 741153 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 956017 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 34877 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 369985 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 811988 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 951748 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 483039 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 432599 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 919344 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 64051 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 527230 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 694079 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 722789 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 812901 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 849286 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 132510 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 190152 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 706092 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 544778 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 574898 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 415865 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 945061 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 554361 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 277208 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 186716 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 504152 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 567438 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 546637 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 156133 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 329406 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 367245 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 792102 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 824684 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 625315 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 799838 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 1x1M | 157698 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 82345 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 84709 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 135646 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 100811 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 114625 | - | - |
| Agilent SurePrint G3 Rat CGH Microarray 4x180K | 137816 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_64_P149930 | - | - |
| Agilent Whole Rat Genome Microarray 4x44K v3 | A_64_P149930 | - | - |
| Agilent SurePrint G3 Rat GE 8x60K Microarray | A_64_P149930 | - | - |
| SurePrint G3 Rat Gene Expression Microarray G4131A | A_44_P276492 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 55622 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 63840 | - | - |
| Agilent Rat Genome CGH Microarray 105A (G4436A) | 29013 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Affymetrix Rat Gene 1.0 ST Array | 10906741 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10906737 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10906743 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10906740 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10906738 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10906739 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10906745 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10906742 | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10906744 | - | - |
| Affymetrix Rat Gene 1.1 ST Array | 10906736 | - | - |
| Rat Genome 230 2.0 Array | 1369454_PM_at | - | - |
| Rat Genome 230 2.0 Array | 1369454_at | - | - |
| Affymetrix HT Rat Focus Array | 1369454_at | - | - |
| Affymetrix HT Rat Focus Array | 1369454_PM_at | - | - |
| Affymetrix Rat Clariom S Assay | PSR0700030581.rn.1 | TC0700003827.rn.1 | RTA TC |
| Rat Expression Set 230 | 1369454_PM_at | - | - |
| Rat Expression Set 230 | 1369454_at | - | - |
| Affymetrix Rat Gene 1.0 ST Array | 10906736 | - | - |
| Rat Genome U34 Set | J04147_at | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| ABI Rat Genome Survey Microarray | 22067970 | - | - |
| Array Name | Probe IDs | Targets | Target Type |
|---|---|---|---|
| Illumina ratRef-12 v1.0 expression beadchip | ILMN_1356241 | - | - |
| RatRef-12 Expression BeadChip | ILMN_56085 | - | - |
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