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Gene Symbol:
Msx1
Gene Name:
msh homeobox 1
Gene Aliases:
-
Chromosome Location:
Chr.14: 77712262 - 77716061 on Build Rnor_6.0
Species:
Rat
Species Specific ID (Flybase ID):
-
Assay ID Rn00667535_m1
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  • Genomic Map
  • Assay Details
  • More Information

Genomic Map

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Assay Details

Gene Symbol: Msx1
Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Amplicon Length
RefSeq NM_031059.1 NP_112321.1 1 - 2 593 83
GenBank mRNA D83036.1 - 1 - 2 593 83

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More Information


Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC1400000775.rn.1

Set Membership:

Ambion siRNA available Amplicon length between 71 and 85 3' Most Recommended Assay Rattus norvegicus 1700 Inventoried Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Msx1

Panther Classification:

Molecular Function -

homeodomain transcription factor

Gene Ontology Categories:

Function(s) Process(es)

negative regulation of transcription from RNA polymerase II promoter
cell morphogenesis
in utero embryonic development
epithelial to mesenchymal transition
heart morphogenesis
epithelial to mesenchymal transition involved in endocardial cushion formation
transcription from RNA polymerase II promoter
heart development
muscle organ development
negative regulation of cell proliferation
anterior/posterior pattern specification
mesenchymal cell proliferation
pituitary gland development
signal transduction involved in regulation of gene expression
negative regulation of cell growth
embryonic limb morphogenesis
BMP signaling pathway
positive regulation of BMP signaling pathway
forebrain development
midbrain development
protein localization to nucleus
embryonic forelimb morphogenesis
embryonic hindlimb morphogenesis
embryonic nail plate morphogenesis
middle ear morphogenesis
odontogenesis of dentin-containing tooth
odontogenesis
regulation of odontogenesis
embryonic digit morphogenesis
negative regulation of apoptotic process
negative regulation of DNA binding
negative regulation of transcription, DNA-templated
positive regulation of transcription from RNA polymerase II promoter
stem cell differentiation
protein stabilization
negative regulation of striated muscle cell differentiation
cartilage development
palate development
face morphogenesis
bone morphogenesis
cartilage morphogenesis
mammary gland epithelium development
BMP signaling pathway involved in heart development
cellular response to nicotine
activation of meiosis
positive regulation of intrinsic apoptotic signaling pathway by p53 class mediator
negative regulation of transcription regulatory region DNA binding
positive regulation of mesenchymal cell apoptotic process
RNA polymerase II regulatory region sequence-specific DNA binding
transcription factor activity, RNA polymerase II core promoter proximal region sequence-specific binding
transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding
transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
p53 binding
molecular_function
DNA binding
sequence-specific DNA binding

MicroArray Probes:

Agilent Affymetrix ABI Illumina

Array Name Probe IDs Targets Target Type
Agilent Whole Rat Genome Microarray 4x44K v2 A_42_P571433 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 368208 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 132283 - -
Agilent Whole Rat Genome Microarray 4x44K v3 A_42_P571433 - -
Agilent Whole Rat Genome Microarray 4x44K v3 A_42_P571433 - -
Agilent SurePrint G3 Rat GE 8x60K Microarray A_42_P571433 - -
SurePrint G3 Rat Gene Expression Microarray G4131A A_42_P571433 - -
Matsumoto (Agilent Rat cDNA Microarray G4105A) 702023119 - -
Agilent Rat Genome CGH Microarray 105A (G4436A) 43568 - -
Agilent Rat cDNA Microarray (G4105A) 702023119 - -
Array Name Probe IDs Targets Target Type
Affymetrix Rat Gene 1.0 ST Array 10773254 - -
Affymetrix Rat Gene 1.0 ST Array 10773253 - -
Affymetrix Rat Gene 1.1 ST Array 10773252 - -
Rat Genome 230 2.0 Array 1368302_at - -
Rat Genome 230 2.0 Array 1368302_PM_at - -
Affymetrix HT Rat Focus Array 1368302_at - -
Affymetrix HT Rat Focus Array 1368302_PM_at - -
Affymetrix Rat Clariom S Assay PSR1400005307.rn.1 TC1400000775.rn.1 RTA TC
Affymetrix Rat Clariom S Assay PSR1400005306.rn.1 TC1400000775.rn.1 RTA TC
Rat Expression Set 230 1368302_at - -
Rat Expression Set 230 1368302_PM_at - -
Affymetrix Rat Gene 1.0 ST Array 10773252 - -
Rat Genome U34 Set D83036_at - -
Array Name Probe IDs Targets Target Type
ABI Rat Genome Survey Microarray 22119128 - -
Array Name Probe IDs Targets Target Type
Illumina ratRef-12 v1.0 expression beadchip ILMN_1372537 - -
RatRef-12 Expression BeadChip ILMN_51890 - -

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