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Gene Symbol:
Hopx
Gene Name:
HOP homeobox
Gene Aliases:
GIIg15b, Hod, Obl
Chromosome Location:
Chr.14: 33354803 - 33362547 on Build Rnor_6.0
Species:
Rat
Species Specific ID (Flybase ID):
-
Assay ID Rn00592446_m1
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Catalog # 4331182
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  • Genomic Map
  • Assay Details
  • More Information

Genomic Map

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Assay Details

Gene Symbol: Hopx
Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Amplicon Length
RefSeq NM_133621.2 NP_598305.2 2 - 3 259 77
GenBank mRNA AF474162.1 - 179 77
AF492685.1 - 2 - 3 259 77
BC070950.1 - 1 - 2 170 7098349 77
FQ212752.1 - 2 - 3 256 77
FQ220854.1 - 2 - 3 258 77
FQ221225.1 - 2 - 3 274 77
FQ222004.1 - 2 - 3 249 77
FQ222724.1 - 2 - 3 191 77
FQ229425.1 - 2 - 3 244 77
FQ229457.1 - 2 - 3 236 77
FQ229504.1 - 2 - 3 236 77
FQ229663.1 - 2 - 3 248 77
FQ229876.1 - 2 - 3 236 77
FQ229892.1 - 2 - 3 274 77
FQ230105.1 - 1 - 2 252 77
FQ230629.1 - 2 - 3 257 77

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More Information


Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC1400000378.rn.1

Set Membership:

Ambion siRNA available Amplicon length between 71 and 85 3' Most Mammalian Gene Collection Recommended Assay Rattus norvegicus 1700 Inventoried Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Hopx

Gene Ontology Categories:

Function(s) Process(es)

negative regulation of transcription from RNA polymerase II promoter
trophectodermal cell differentiation
transcription, DNA-templated
heart development
regulation of heart contraction
histone deacetylation
regulation of protein binding
positive regulation of skeletal muscle tissue regeneration
negative regulation of cell differentiation
lung alveolus development
positive regulation of striated muscle cell differentiation
DNA binding

MicroArray Probes:

Agilent Affymetrix ABI Illumina

Array Name Probe IDs Targets Target Type
Agilent Whole Rat Genome Microarray 4x44K v2 A_44_P404591 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 382922 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 970999 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 604829 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 867209 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 750193 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 313249 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 818318 - -
Agilent SurePrint G3 Rat CGH Microarray 4x180K 116508 - -
Agilent Whole Rat Genome Microarray 4x44K v3 A_44_P404591 - -
Agilent Whole Rat Genome Microarray 4x44K v3 A_44_P404591 - -
Agilent SurePrint G3 Rat GE 8x60K Microarray A_44_P404591 - -
SurePrint G3 Rat Gene Expression Microarray G4131A A_44_P404591 - -
Agilent Rat Genome CGH Microarray 105A (G4436A) 25675 - -
Agilent Rat Genome CGH Microarray 105A (G4436A) 70508 - -
Agilent Rat Genome CGH Microarray 105A (G4436A) 2394 - -
Array Name Probe IDs Targets Target Type
Affymetrix Rat Gene 1.0 ST Array 10772195 - -
Affymetrix Rat Gene 1.0 ST Array 10772199 - -
Affymetrix Rat Gene 1.0 ST Array 10772198 - -
Affymetrix Rat Gene 1.0 ST Array 10772196 - -
Affymetrix Rat Gene 1.1 ST Array 10772194 - -
Rat Genome 230 2.0 Array 1367816_PM_at - -
Rat Genome 230 2.0 Array 1367816_at - -
Affymetrix HT Rat Focus Array 1367816_PM_at - -
Affymetrix HT Rat Focus Array 1367816_at - -
Affymetrix Rat Clariom S Assay PSR1400002966.rn.1 TC1400000378.rn.1 RTA TC
Affymetrix Rat Clariom S Assay PSR1400002967.rn.1 TC1400000378.rn.1 RTA TC
Affymetrix Rat Clariom S Assay PSR1400002969.rn.1 TC1400000378.rn.1 RTA TC
Affymetrix Rat Clariom S Assay PSR1400002963.rn.1 TC1400000378.rn.1 RTA TC
Affymetrix Rat Clariom S Assay PSR1400002968.rn.1 TC1400000378.rn.1 RTA TC
Affymetrix Rat Clariom S Assay PSR1400002965.rn.1 TC1400000378.rn.1 RTA TC
Rat Expression Set 230 1367816_at - -
Rat Expression Set 230 1367816_PM_at - -
Affymetrix Rat Gene 1.0 ST Array 10772194 - -
Rat Genome U34 Set rc_AI102887_at - -
Rat Genome U34 Set rc_AI102739_at - -
Array Name Probe IDs Targets Target Type
ABI Rat Genome Survey Microarray 22336986 - -
Array Name Probe IDs Targets Target Type
Illumina ratRef-12 v1.0 expression beadchip ILMN_1363702 - -
RatRef-12 Expression BeadChip ILMN_51495 - -

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