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See other PITX1 GE Assays ›
Gene Symbol:
Pitx1
Gene Name:
paired-like homeodomain 1
Gene Aliases:
Bft
Chromosome Location:
Chr.17: 8873184 - 8884428 on Build Rnor_6.0
Species:
Rat
Species Specific ID (Flybase ID):
-
Assay ID Rn00586187_m1
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Catalog # 4331182
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  • Genomic Map
  • Assay Details
  • More Information

Genomic Map

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Assay Details

Gene Symbol: Pitx1
Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Amplicon Length
RefSeq NM_053624.2 NP_446076.1 1 - 2 457 90
XM_006253569.2 XP_006253631.1 2 - 3 275 90
GenBank mRNA AB047298.1 - 1 - 2 478 90
BC061966.1 - 1 - 2 457 5621094 90

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More Information


Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC1700000133.rn.1

Set Membership:

Ambion siRNA available Amplicon length between 86 and 100 3' Most Mammalian Gene Collection Recommended Assay Rattus norvegicus 1700 Inventoried Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Pitx1

Panther Classification:

Molecular Function -

homeodomain transcription factor

Gene Ontology Categories:

Function(s) Process(es)

skeletal system development
transcription, DNA-templated
regulation of transcription, DNA-templated
transcription from RNA polymerase II promoter
branchiomeric skeletal muscle development
pituitary gland development
embryonic hindlimb morphogenesis
hindlimb morphogenesis
positive regulation of transcription from RNA polymerase II promoter
myoblast fate commitment
cartilage development
RNA polymerase II core promoter proximal region sequence-specific DNA binding
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
transcriptional activator activity, RNA polymerase II transcription factor binding
transcription factor activity, sequence-specific DNA binding

MicroArray Probes:

Agilent Affymetrix ABI Illumina

Array Name Probe IDs Targets Target Type
Agilent Whole Rat Genome Microarray 4x44K v2 A_43_P15339 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 644784 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 123421 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 552227 - -
Agilent Whole Rat Genome Microarray 4x44K v3 A_43_P15339 - -
Agilent Whole Rat Genome Microarray 4x44K v3 A_43_P15339 - -
Agilent SurePrint G3 Rat GE 8x60K Microarray A_43_P15339 - -
SurePrint G3 Rat Gene Expression Microarray G4131A A_43_P15339 - -
Array Name Probe IDs Targets Target Type
Affymetrix Rat Gene 1.0 ST Array 10793985 - -
Affymetrix Rat Gene 1.0 ST Array 10793983 - -
Affymetrix Rat Gene 1.0 ST Array 10793982 - -
Affymetrix Rat Gene 1.0 ST Array 10793984 - -
Affymetrix Rat Gene 1.1 ST Array 10793981 - -
Rat Genome 230 2.0 Array 1369288_at - -
Rat Genome 230 2.0 Array 1369288_PM_at - -
Affymetrix HT Rat Focus Array 1369288_at - -
Affymetrix HT Rat Focus Array 1369288_PM_at - -
Affymetrix Rat Clariom S Assay PSR1700001039.rn.1 TC1700000133.rn.1 RTA TC
Affymetrix Rat Clariom S Assay PSR1700001041.rn.1 TC1700000133.rn.1 RTA TC
Affymetrix Rat Clariom S Assay PSR1700001042.rn.1 TC1700000133.rn.1 RTA TC
Affymetrix Rat Clariom S Assay PSR1700001040.rn.1 TC1700000133.rn.1 RTA TC
Affymetrix Rat Clariom S Assay PSR1700001043.rn.1 TC1700000133.rn.1 RTA TC
Affymetrix Rat Clariom S Assay PSR1700001045.rn.1 TC1700000133.rn.1 RTA TC
Rat Expression Set 230 1369288_at - -
Rat Expression Set 230 1369288_PM_at - -
Affymetrix Rat Gene 1.0 ST Array 10793981 - -
Array Name Probe IDs Targets Target Type
ABI Rat Genome Survey Microarray 21459147 - -
Array Name Probe IDs Targets Target Type
Illumina ratRef-12 v1.0 expression beadchip ILMN_1359363 - -
RatRef-12 Expression BeadChip ILMN_52685 - -

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