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Gene Symbol:
Cd74
Gene Name:
Cd74 molecule, major histocompatibility complex, class II invariant chain
Gene Aliases:
INVG34
Chromosome Location:
Chr.18: 56071420 - 56080851 on Build Rnor_6.0
Species:
Rat
Species Specific ID (Flybase ID):
-
Assay ID Rn00565062_m1
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Catalog # 4331182
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  • Genomic Map
  • Assay Details
  • More Information

Genomic Map

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Assay Details

Gene Symbol: Cd74
Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Amplicon Length
RefSeq NM_013069.2 NP_037201.1 1 - 2 172 68
XM_006254761.2 XP_006254823.1 1 - 2 230 68
GenBank mRNA BC059152.1 - 1 - 2 153 6890709 68
CB696567.1 - 1 - 2 182 68
FQ219430.1 - 1 - 2 155 68
FQ225098.1 - 1 - 2 147 68
FQ227357.1 - 1 - 2 149 68
FQ227455.1 - 1 - 2 152 68
FQ227561.1 - 1 - 2 154 68
FQ228116.1 - 1 - 2 155 68
FQ231756.1 - 1 - 2 156 68
FQ232412.1 - 1 - 2 197 68
FQ232423.1 - 1 - 2 186 68
FQ232867.1 - 1 - 2 156 68
FQ232996.1 - 1 - 2 149 68
FQ233568.1 - 1 - 2 155 68
FQ233706.1 - 1 - 2 155 68
FQ234457.1 - 1 - 2 158 68
X13044.1 - 1 - 2 128 68
X14254.1 - 1 - 2 136 68

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More Information


Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC1800000616.rn.1

Set Membership:

Ambion siRNA available Amplicon length less than or equal to 70 Mammalian Gene Collection Recommended Assay Rattus norvegicus 1700 Inventoried Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Cd74

Panther Classification:

Molecular Function -

scaffold/adaptor protein

Gene Ontology Categories:

Function(s) Process(es)

activation of MAPK activity
prostaglandin biosynthetic process
positive regulation of cytokine-mediated signaling pathway
positive regulation of dendritic cell antigen processing and presentation
negative regulation of peptide secretion
positive regulation of type 2 immune response
negative regulation of mature B cell apoptotic process
protein complex assembly
intracellular protein transport
defense response
signal transduction
cell proliferation
immunoglobulin mediated immune response
cytokine-mediated signaling pathway
antigen processing and presentation
antigen processing and presentation of exogenous peptide antigen via MHC class II
positive regulation of B cell proliferation
macrophage migration inhibitory factor signaling pathway
negative regulation of apoptotic process
negative regulation of DNA damage response, signal transduction by p53 class mediator
positive thymic T cell selection
negative thymic T cell selection
negative regulation of T cell differentiation
positive regulation of T cell differentiation
positive regulation of fibroblast proliferation
positive regulation of peptidyl-tyrosine phosphorylation
chaperone mediated protein folding requiring cofactor
positive regulation of macrophage cytokine production
positive regulation of ERK1 and ERK2 cascade
positive regulation of neutrophil chemotaxis
negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator
positive regulation of chemokine (C-X-C motif) ligand 2 production
beta-amyloid binding
cytokine receptor activity
cytokine binding
MHC class II protein complex binding
macrophage migration inhibitory factor binding
MHC class II protein binding
MHC class II protein binding, via antigen binding groove
protein binding involved in protein folding
nitric-oxide synthase binding

MicroArray Probes:

Agilent Affymetrix ABI Illumina

Array Name Probe IDs Targets Target Type
Agilent Whole Rat Genome Microarray 4x44K v2 A_44_P549494 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 343853 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 929190 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 774402 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 216619 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 796592 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 799751 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 718430 - -
Agilent SurePrint G3 Rat CGH Microarray 4x180K 96642 - -
Agilent SurePrint G3 Rat CGH Microarray 4x180K 50700 - -
Agilent Whole Rat Genome Microarray 4x44K v3 A_44_P549494 - -
Agilent Whole Rat Genome Microarray 4x44K v3 A_44_P549494 - -
Agilent SurePrint G3 Rat GE 8x60K Microarray A_44_P549494 - -
SurePrint G3 Rat Gene Expression Microarray G4131A A_44_P549494 - -
Matsumoto (Agilent Rat cDNA Microarray G4105A) 700542793 - -
Matsumoto (Agilent Rat cDNA Microarray G4105A) 702147295 - -
Agilent Rat Genome CGH Microarray 105A (G4436A) 88541 - -
Agilent Rat cDNA Microarray (G4105A) 702147295 - -
Agilent Rat cDNA Microarray (G4105A) 700542793 - -
Array Name Probe IDs Targets Target Type
Affymetrix Rat Gene 1.0 ST Array 10802022 - -
Affymetrix Rat Gene 1.0 ST Array 10802014 - -
Affymetrix Rat Gene 1.0 ST Array 10802015 - -
Affymetrix Rat Gene 1.0 ST Array 10802021 - -
Affymetrix Rat Gene 1.0 ST Array 10802019 - -
Affymetrix Rat Gene 1.0 ST Array 10802016 - -
Affymetrix Rat Gene 1.0 ST Array 10802017 - -
Affymetrix Rat Gene 1.0 ST Array 10802018 - -
Affymetrix Rat Gene 1.1 ST Array 10802013 - -
Rat Genome 230 2.0 Array 1367679_PM_at - -
Rat Genome 230 2.0 Array 1367679_at - -
Affymetrix HT Rat Focus Array 1367679_PM_at - -
Affymetrix HT Rat Focus Array 1367679_at - -
Affymetrix Rat Clariom S Assay PSR1800004483.rn.1 TC1800000616.rn.1 RTA TC
Affymetrix Rat Clariom S Assay PSR1800004479.rn.1 TC1800000616.rn.1 RTA TC
Affymetrix Rat Clariom S Assay PSR1800004480.rn.1 TC1800000616.rn.1 RTA TC
Affymetrix Rat Clariom S Assay PSR1800004481.rn.1 TC1800000616.rn.1 RTA TC
Rat Expression Set 230 1367679_PM_at - -
Rat Expression Set 230 1367679_at - -
Affymetrix Rat Gene 1.0 ST Array 10802013 - -
Rat Genome U34 Set X13044_at - -
Rat Genome U34 Set X13044_g_at - -
Rat Genome U34 Set X14254cds_at - -
Rat Genome U34 Set X14254cds_g_at - -
Rat Genome U34 Set rc_AI105172_i_at - -
Rat Genome U34 Set rc_AI105172_r_at - -
Array Name Probe IDs Targets Target Type
ABI Rat Genome Survey Microarray 21537743 - -
Array Name Probe IDs Targets Target Type
Illumina ratRef-12 v1.0 expression beadchip ILMN_1373953 - -
RatRef-12 Expression BeadChip ILMN_66384 - -

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