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See other APOBEC1 GE Assays ›
Gene Symbol:
Apobec1
Gene Name:
apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1
Gene Aliases:
REPR
Chromosome Location:
Chr.4: 155386367 - 155414032 on Build Rnor_6.0
Species:
Rat
Species Specific ID (Flybase ID):
-
Assay ID Rn00563748_m1
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Catalog # 4331182
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  • Genomic Map
  • Assay Details
  • More Information

Genomic Map

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Assay Details

Gene Symbol: Apobec1
Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Amplicon Length
RefSeq NM_012907.2 NP_037039.1 1 - 2 505 64
XM_006237290.2 XP_006237352.1 2 - 3 697 64
XM_006237291.2 XP_006237353.1 2 - 3 753 64
XM_006237292.2 XP_006237354.1 2 - 3 274 64
XM_006237293.2 XP_006237355.1 2 - 3 429 64
XM_008763219.1 XP_008761441.1 2 - 3 344 64
XM_008763220.1 XP_008761442.1 2 - 3 213 64
GenBank mRNA BC085335.1 - 1 - 2 505 7301703 64
L07114.1 - 1 - 2 41 64

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More Information


Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0400003691.rn.1

Additional Information:

This assay is in the 5'UTR region of the BC085335.1,L07114.1,NM_012907.2,XM_006237290.2,XM_006237291.2,XM_006237292.2,XM_006237293.2,XM_008763220.1 transcripts.

Set Membership:

Ambion siRNA available Amplicon length less than or equal to 70 Mammalian Gene Collection Recommended Assay Rattus norvegicus Inventoried Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Apobec1

Panther Classification:

Molecular Function -

RNA processing factor

Gene Ontology Categories:

Function(s) Process(es)

mRNA processing
response to osmotic stress
cytidine deamination
response to zinc ion
response to gamma radiation
cytidine to uridine editing
mRNA modification
cellular response to insulin stimulus
regulation of cell proliferation
lipoprotein metabolic process
lipoprotein biosynthetic process
response to drug
lipoprotein transport
response to ethanol
cytidine metabolic process
mRNA stabilization
response to calcium ion
defense response to virus
DNA cytosine deamination
DNA demethylation
negative regulation of methylation-dependent chromatin silencing
RNA binding
cytidine deaminase activity
cytosine deaminase activity
protein binding
zinc ion binding
AU-rich element binding

MicroArray Probes:

Affymetrix

Array Name Probe IDs Targets Target Type
Affymetrix Rat Clariom S Assay PSR0400026089.rn.1 TC0400003691.rn.1 RTA TC
Affymetrix Rat Clariom S Assay PSR0400026091.rn.1 TC0400003691.rn.1 RTA TC
Affymetrix Rat Clariom S Assay PSR0400026090.rn.1 TC0400003691.rn.1 RTA TC

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