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Gene Symbol:
Snai1
Gene Name:
snail family zinc finger 1
Gene Aliases:
Sna
Chromosome Location:
Chr.3: 164274710 - 164279199 on Build Rnor_6.0
Species:
Rat
Species Specific ID (Flybase ID):
-
Assay ID Rn00441533_g1
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Catalog # 4331182
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  • Genomic Map
  • Assay Details
  • More Information

Genomic Map

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Assay Details

Gene Symbol: Snai1
Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Amplicon Length
RefSeq NM_053805.1 NP_446257.1 1 - 2 162 79
GenBank mRNA BC079210.1 - 1 - 2 162 7131806 79

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More Information


Updated Mapping Information

This assay targets the same location as RTA transcript cluster(s) TC0300002366.rn.1

Set Membership:

Ambion siRNA available Amplicon length between 71 and 85 3' Most Mammalian Gene Collection Detect Genomic DNA Recommended Assay Rattus norvegicus 1700 Inventoried Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Snai1

Panther Classification:

Molecular Function -

C2H2 zinc finger transcription factor

Gene Ontology Categories:

Function(s) Process(es)

negative regulation of transcription from RNA polymerase II promoter
osteoblast differentiation
mesoderm formation
epithelial to mesenchymal transition
epithelial to mesenchymal transition involved in endocardial cushion formation
regulation of transcription from RNA polymerase II promoter
mesoderm development
positive regulation of epithelial to mesenchymal transition
negative regulation of vitamin D biosynthetic process
cell migration
positive regulation of cell migration
hair follicle morphogenesis
negative regulation of DNA damage response, signal transduction by p53 class mediator
negative regulation of cell cycle
negative regulation of transcription, DNA-templated
positive regulation of transcription, DNA-templated
palate development
cartilage morphogenesis
trophoblast giant cell differentiation
negative regulation of cell differentiation involved in embryonic placenta development
left/right pattern formation
Notch signaling involved in heart development
negative regulation of intrinsic apoptotic signaling pathway in response to DNA damage
regulation of bicellular tight junction assembly
RNA polymerase II regulatory region sequence-specific DNA binding
transcriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding
transcriptional repressor activity, RNA polymerase II transcription regulatory region sequence-specific binding
kinase binding
sequence-specific DNA binding
metal ion binding

MicroArray Probes:

Agilent Affymetrix ABI Illumina

Array Name Probe IDs Targets Target Type
Agilent Whole Rat Genome Microarray 4x44K v2 A_64_P161829 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 255130 - -
Agilent SurePrint G3 Rat CGH Microarray 1x1M 149209 - -
Agilent SurePrint G3 Rat CGH Microarray 4x180K 106204 - -
Agilent Whole Rat Genome Microarray 4x44K v3 A_44_P899293 - -
Agilent Whole Rat Genome Microarray 4x44K v3 A_44_P899293 - -
Agilent SurePrint G3 Rat GE 8x60K Microarray A_44_P899293 - -
SurePrint G3 Rat Gene Expression Microarray G4131A A_44_P899293 - -
SurePrint G3 Rat Gene Expression Microarray G4131A A_44_P328087 - -
Agilent Rat Genome CGH Microarray 105A (G4436A) 60361 - -
Array Name Probe IDs Targets Target Type
Affymetrix Rat Gene 1.0 ST Array 10842466 - -
Affymetrix Rat Gene 1.0 ST Array 10842468 - -
Affymetrix Rat Gene 1.0 ST Array 10842467 - -
Affymetrix Rat Gene 1.1 ST Array 10842465 - -
Rat Genome 230 2.0 Array 1373219_at - -
Rat Genome 230 2.0 Array 1373219_PM_at - -
Affymetrix HT Rat Focus Array 1373219_at - -
Affymetrix HT Rat Focus Array 1373219_PM_at - -
Affymetrix Rat Clariom S Assay PSR0300017735.rn.1 TC0300002366.rn.1 RTA TC
Affymetrix Rat Clariom S Assay PSR0300017733.rn.1 TC0300002366.rn.1 RTA TC
Affymetrix Rat Clariom S Assay PSR0300017734.rn.1 TC0300002366.rn.1 RTA TC
Rat Expression Set 230 1373219_PM_at - -
Rat Expression Set 230 1373219_at - -
Affymetrix Rat Gene 1.0 ST Array 10842465 - -
Rat Genome U34 Set rc_AA946199_at - -
Array Name Probe IDs Targets Target Type
ABI Rat Genome Survey Microarray 22143318 - -
Array Name Probe IDs Targets Target Type
Illumina ratRef-12 v1.0 expression beadchip ILMN_1374499 - -

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