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Gene Symbol:
Cldnd1
Gene Name:
Gene Aliases:
Species:
Mouse
Species Specific ID (Flybase ID):
Assay ID Mm04335555_m1
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Catalog # 4426961
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Assay Details

Gene Symbol: Cldnd1
Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Amplicon Length
RefSeq NR_045517.1 1 - 2 178 89
NR_045518.1 1 - 2 178 89
GenBank mRNA AK003808.1 - 1 - 2 70 89
AK009743.1 - 1 - 2 62 88
AK152121.1 - 1 - 2 73 89
AK152722.1 - 1 - 2 68 89
BY122667.1 - 1 - 2 179 89
CD560460.1 - 1 - 2 59 89
Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Transcript Location Amplicon Length
GenBankmRNA BY238265.1 - 1 - 2 56 Chr. 16 - 58728032 - 58731354 [+] on Build GRCm38 89
GenBankmRNA BY114147.1 - 1 - 2 55 Chr. 16 - 58728033 - 58729696 [+] on Build GRCm38 89
GenBankmRNA BY783534.1 - 1 - 2 80 Chr. 16 - 58728008 - 58729664 [+] on Build GRCm38 89
GenBankmRNA AA209590.1 - 1 - 2 94 Chr. 16 - 58727997 - 58731380 [+] on Build GRCm38 87
GenBankmRNA BY249766.1 - 1 - 2 58 Chr. 16 - 58728031 - 58731372 [+] on Build GRCm38 89
GenBankmRNA CK793690.1 - 107 Chr. - - [-] on Build 89
GenBankmRNA CK031921.1 - 1 - 2 68 Chr. 16 - 58728020 - 58732915 [+] on Build GRCm38 89
GenBankmRNA BY321183.1 - 1 - 2 68 Chr. 16 - 58728022 - 58729735 [+] on Build GRCm38 89
GenBankmRNA BB863788.1 - 1 - 2 61 Chr. 16 - 58728027 - 58731353 [+] on Build GRCm38 89
GenBankmRNA CN696996.1 - 1 - 2 56 Chr. 16 - 58728032 - 58732669 [+] on Build GRCm38 89
GenBankmRNA BY321926.1 - 1 - 2 81 Chr. 16 - 58728008 - 58729702 [+] on Build GRCm38 89
GenBankmRNA BY790907.1 - 1 - 2 80 Chr. 16 - 58728008 - 58729699 [+] on Build GRCm38 89
GenBankmRNA AA756671.1 - 1 - 2 66 Chr. 16 - 58728019 - 58731370 [+] on Build GRCm38 86
GenBankmRNA BY162275.1 - 1 - 2 68 Chr. 16 - 58728022 - 58729724 [+] on Build GRCm38 89
GenBankmRNA BY284440.1 - 1 - 2 Chr. 16 - 58727931 - 58729681 [+] on Build GRCm38 89
GenBankmRNA BY082153.1 - 1 - 2 93 Chr. 16 - 58727995 - 58729693 [+] on Build GRCm38 89
GenBankmRNA BY744806.1 - 1 - 2 73 Chr. 16 - 58728015 - 58732890 [+] on Build GRCm38 89
GenBankmRNA CA533125.1 - 1 - 2 69 Chr. 16 - 58728019 - 58731405 [+] on Build GRCm38 89
GenBankmRNA BY776884.1 - 1 - 2 80 Chr. 16 - 58728008 - 58729717 [+] on Build GRCm38 89
GenBankmRNA BY116179.1 - 1 - 2 55 Chr. 16 - 58728033 - 58729718 [+] on Build GRCm38 89
GenBankmRNA CJ084524.1 - 1 - 2 81 Chr. 16 - 58728008 - 58729711 [+] on Build GRCm38 89
GenBankmRNA BY096893.1 - 1 - 2 93 Chr. 16 - 58727995 - 58729722 [+] on Build GRCm38 89
GenBankmRNA BY298899.1 - 1 - 2 81 Chr. 16 - 58728008 - 58729747 [+] on Build GRCm38 89
GenBankmRNA BY097706.1 - 1 - 2 93 Chr. 16 - 58727995 - 58729727 [+] on Build GRCm38 89
GenBankmRNA BY292403.1 - 1 - 2 157 Chr. 16 - 58727931 - 58729653 [+] on Build GRCm38 89
GenBankmRNA BY012981.1 - 1 - 2 78 Chr. 16 - 58728011 - 58729727 [+] on Build GRCm38 89
GenBankmRNA AV450887.1 - 1 - 2 75 Chr. 16 - 58728013 - 58731408 [+] on Build GRCm38 89
GenBankmRNA BY308560.1 - 1 - 2 68 Chr. 16 - 58728022 - 58729723 [+] on Build GRCm38 89
GenBankmRNA BE629024.1 - 1 - 2 65 Chr. 16 - 58728023 - 58731412 [+] on Build GRCm38 89
GenBankmRNA W33804.1 - 51 Chr. - - [-] on Build 87
GenBankmRNA BY709381.1 - 62 Chr. - - [-] on Build 88
GenBankmRNA AI098356.1 - 1 - 2 148 Chr. 16 - 58727949 - 58731364 [+] on Build GRCm38 88
GenBankmRNA BY704067.1 - 1 - 2 66 Chr. 16 - 58728022 - 58732724 [+] on Build GRCm38 89
GenBankmRNA BY243914.1 - 1 - 2 58 Chr. 16 - 58728031 - 58731418 [+] on Build GRCm38 89
GenBankmRNA AA498422.1 - 1 - 2 80 Chr. 16 - 58728019 - 58731404 [+] on Build GRCm38 86
GenBankmRNA BY014468.1 - 1 - 2 78 Chr. 16 - 58728011 - 58729734 [+] on Build GRCm38 89
GenBankmRNA BY745267.1 - 1 - 2 68 Chr. 16 - 58728022 - 58732871 [+] on Build GRCm38 89

Adjacent Gene Details

Gene name Gene Symbol Alias Distance Relative Direction Location Chromsome
Upstream G protein-coupled receptor 15 Gpr15 4933439K08Rik -9.2kb Anti-sense Chr. 16 - 58717435 - 58718724 on NCBI Build GRCm38
Downstream olfactory receptor 172 Olfr172 MOR184-2 30.4kb Anti-sense Chr. 16 - 58760152 - 58761240 on NCBI Build GRCm38

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More Information


Additional Information:

This assay is in the 5'UTR region of the AK003808.1, AK009743.1, AK152121.1, AK152722.1 transcripts.

Set Membership:

 Amplicon length between 86 and 100 Mus musculus Probe spans exons

Gene Ontology Categories:

Function(s) Process(es)


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