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See other HMGA2-PS1 GE Assays ›
Gene Symbol:
Hmga2-ps1
Gene Name:
high mobility group AT-hook 2, pseudogene 1
Gene Aliases:
EG666235, Gm7996, Hmgic-ps1, [y]i-c
Chromosome Location:
Chr.1: 176834624 - 176836133 on Build GRCm38
Species:
Mouse
Species Specific ID (Flybase ID):
-
Assay ID Mm04278139_s1
Size
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Catalog # 4426961
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  • Genomic Map
  • Assay Details
  • More Information

Genomic Map

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Assay Details

Gene Symbol: Hmga2-ps1
Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Amplicon Length
RefSeq NR_037996.1 1 1126 64
GenBank mRNA AK033703.1 - 1 1127 64
BC064076.1 - 1 1095 64
Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Transcript Location Amplicon Length
GenBankmRNA CO806521.1 - 1 Chr. 1 - 176834623 - 176835320 [+] on Build GRCm38 64
GenBankmRNA DV660489.1 - 1 92 Chr. 1 - 176834623 - 176835084 [-] on Build GRCm38 64
GenBankmRNA AV377334.2 - 1 334 Chr. 1 - 176834628 - 176835329 [-] on Build GRCm38 64
GenBankmRNA CF104857.1 - 1 352 Chr. 1 - 176834786 - 176835360 [-] on Build GRCm38 64
GenBankmRNA BX517959.1 - 1 58 Chr. 1 - 176834623 - 176835064 [-] on Build GRCm38 64
GenBankmRNA AA980725.1 - 1 57 Chr. 1 - 176834628 - 176835064 [-] on Build GRCm38 64

Adjacent Gene Details

Gene name Gene Symbol Alias Distance Relative Direction Location Chromsome
Upstream centrosomal protein 170 Cep170 4933426L22Rik,
A330004A13Rik,
AI195353
-20.5kb Sense Chr. 1 - 176733653 - 176814173 on NCBI Build GRCm38
Downstream predicted gene 15423 Gm15423 OTTMUSG00000021520 72.6kb Sense Chr. 1 - 176908759 - 176941002 on NCBI Build GRCm38

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More Information


Additional Information:

Based on assay re-evaluation, this assay may detect genomic DNA. Please contact Tech Support if you need more information.

Set Membership:

Amplicon length less than or equal to 70 3' Most Mammalian Gene Collection Detect Genomic DNA Mus musculus 1700 Both primers and probe map within a single exon

MicroArray Probes:

Agilent Affymetrix ABI Illumina

Array Name Probe IDs Targets Target Type
Agilent Whole Mouse Genome Microarray 4x44K v2 A_55_P2320283 AK033703.1 mouse_transcriptome
Agilent Whole Mouse Genome Microarray 4x44K v2 A_55_P2320283 AV377334.2 mouse_transcriptome
Agilent Whole Mouse Genome Microarray 4x44K v2 A_55_P2320283 AA980725.1 mouse_transcriptome
Agilent Whole Mouse Genome Microarray 4x44K v2 A_55_P2320283 BC064076.1 mouse_transcriptome
Whole Mouse Genome G4122A A_51_P449580 AK033703.1 mouse_transcriptome
Agilent Mouse Developmental Microarray 44K G2519A Option 002 A_66_P125438 - -
Array Name Probe IDs Targets Target Type
Affymetrix HT MG-430 PM Array Plate 1440559_PM_at - -
Mouse Genome 430 2.0 Array 1440559_at - -
Mouse Genome 430 2.0 Array 1440559_PM_at - -
Affymetrix Mouse Clariom S Array PSR0100029764.mm.1 NR_037996.1 Refseq
Affymetrix Mouse Clariom S Array PSR0100029764.mm.1 TC0100003625.mm.1 MTA TC
Mouse Expression Set 430 1440559_PM_at - -
Mouse Expression Set 430 1440559_at - -
Affymetrix HT Mouse Genome 430B Array 1440559_at - -
Affymetrix HT Mouse Genome 430B Array 1440559_PM_at - -
Array Name Probe IDs Targets Target Type
ABI Mouse Genome Survey Microarray 853873 - -
Array Name Probe IDs Targets Target Type
MouseWG-6 v2 Expression BeadChip 106940102 - -
Illumina mouse-6 v1.0 expression beadchip 104150390 - -
Illumina mouse-6 v1.1 expression beadchip ILMN_2521893 - -
mouse-6 v1.1 (Illumina) scl0015365.1_6-S - -
Illumina Sentrix mouse-6.v1 bead array 104150390 - -
Illumina Sentrix Mouse-6 Expression BeadChip (2) 104150390 - -
Illumina MouseWG-6 v2.0 expression beadchip ILMN_2521893 - -

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