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See other VDR GE Assays ›
Gene Symbol:
Vdr
Gene Name:
vitamin D receptor
Gene Aliases:
Nr1i1
Chromosome Location:
Chr.15: 97854427 - 97908296 on Build GRCm38
Species:
Mouse
Species Specific ID (Flybase ID):
-
Assay ID Mm01309607_m1
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Catalog # 4351372
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  • Genomic Map
  • Assay Details
  • More Information

Genomic Map

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Assay Details

Gene Symbol: Vdr
Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Amplicon Length
RefSeq NM_009504.4 NP_033530.2 2 - 3 132 92
GenBank mRNA AK030339.1 - 2 - 3 133 92
AK154647.1 - 2 - 3 107 92
AK156789.1 - 2 - 3 148 92
BC006716.1 - 2 - 3 98 3710866 92
D31969.1 - 2 - 3 100 92

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More Information


Updated Mapping Information

This assay targets the same location as MTA transcript cluster(s) TC1500002159.mm.1

Additional Information:

This assay is in the 5'UTR region of the AK030339.1,AK154647.1,AK156789.1,BC006716.1,D31969.1,NM_009504.4 transcripts.

Set Membership:

Ambion siRNA available Amplicon length between 86 and 100 Nuclear Receptor Mammalian Gene Collection Mus musculus Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Vdr

Gene Ontology Categories:

Function(s) Process(es)

negative regulation of transcription from RNA polymerase II promoter
cell morphogenesis
skeletal system development
transcription, DNA-templated
regulation of transcription, DNA-templated
regulation of transcription from RNA polymerase II promoter
transcription from RNA polymerase II promoter
calcium ion transport
cellular calcium ion homeostasis
multicellular organism development
lactation
negative regulation of cell proliferation
organ morphogenesis
positive regulation of gene expression
negative regulation of keratinocyte proliferation
positive regulation of vitamin D 24-hydroxylase activity
intracellular receptor signaling pathway
bile acid signaling pathway
steroid hormone mediated signaling pathway
positive regulation of keratinocyte differentiation
negative regulation of transcription, DNA-templated
positive regulation of transcription from RNA polymerase II promoter
intestinal absorption
regulation of calcium ion transport
positive regulation of apoptotic process involved in mammary gland involution
regulation of calcidiol 1-monooxygenase activity
mammary gland branching involved in pregnancy
vitamin D receptor signaling pathway
apoptotic signaling pathway
DNA binding
transcription factor activity, sequence-specific DNA binding
steroid hormone receptor activity
RNA polymerase II transcription factor activity, ligand-activated sequence-specific DNA binding
vitamin D binding
protein binding
zinc ion binding
calcitriol receptor activity
lithocholic acid receptor activity
sequence-specific DNA binding
metal ion binding
retinoid X receptor binding
vitamin D response element binding
calcitriol binding
lithocholic acid binding

MicroArray Probes:

Affymetrix

Array Name Probe IDs Targets Target Type
Affymetrix Mouse Clariom S Array PSR1500017441.mm.1 NM_009504.4.1 Refseq
Affymetrix Mouse Clariom S Array PSR1500017441.mm.1 NM_009504.4 Refseq
Affymetrix Mouse Clariom S Array PSR1500017441.mm.1 TC1500002159.mm.1 MTA TC
Affymetrix Mouse Clariom S Array PSR1500017443.mm.1 NM_009504.4.1 Refseq
Affymetrix Mouse Clariom S Array PSR1500017443.mm.1 NM_009504.4 Refseq
Affymetrix Mouse Clariom S Array PSR1500017443.mm.1 TC1500002159.mm.1 MTA TC

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