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See other SFPQ GE Assays ›
Gene Symbol:
Sfpq
Gene Name:
splicing factor proline/glutamine rich (polypyrimidine tract binding protein associated)
Gene Aliases:
1110004P21Rik, 2810416M14Rik, 5730453G22Rik, 9030402K04Rik, AU021830, D4Ertd314e, Gm12940, OTTMUSG00000009329, PSF, REP1
Chromosome Location:
Chr.4: 127020560 - 127037016 on Build GRCm38
Species:
Mouse
Species Specific ID (Flybase ID):
-
Assay ID Mm01179808_g1
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Catalog # 4351372
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  • Genomic Map
  • Assay Details
  • More Information

Genomic Map

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Assay Details

Gene Symbol: Sfpq
Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Amplicon Length
RefSeq NM_023603.3 NP_076092.1 1 - 2 921 63
NR_045010.1 1 - 2 921 63
GenBank mRNA AF272847.1 - 1 - 2 214 63
AK157783.1 - 2 - 3 558 63
AY034062.1 - 1 - 2 836 63
BC080848.1 - 1 - 2 887 63
BC089305.1 - 1 - 2 887 30360144 63

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More Information


Updated Mapping Information

This assay targets the same location as MTA transcript cluster(s) TC0400001477.mm.1

Set Membership:

Ambion siRNA available Amplicon length less than or equal to 70 Mammalian Gene Collection Detect Genomic DNA Mus musculus 1700 Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Sfpq

Panther Classification:

Molecular Function -

RNA metabolism protein

Gene Ontology Categories:

Function(s) Process(es)

negative regulation of transcription from RNA polymerase II promoter
alternative mRNA splicing, via spliceosome
double-strand break repair via homologous recombination
DNA repair
transcription, DNA-templated
regulation of transcription, DNA-templated
mRNA processing
cellular response to DNA damage stimulus
RNA splicing
regulation of circadian rhythm
negative regulation of circadian rhythm
positive regulation of sister chromatid cohesion
negative regulation of transcription, DNA-templated
rhythmic process
chromosome organization
regulation of cell cycle
histone H3 deacetylation
positive regulation of oxidative stress-induced intrinsic apoptotic signaling pathway
nucleotide binding
transcription regulatory region sequence-specific DNA binding
core promoter binding
nucleic acid binding
DNA binding
RNA binding
protein binding
histone deacetylase binding
transcription regulatory region DNA binding
poly(A) RNA binding

MicroArray Probes:

Affymetrix ABI

Array Name Probe IDs Targets Target Type
Affymetrix Mouse Clariom S Array PSR0400011265.mm.1 NM_023603.3.1 Refseq
Affymetrix Mouse Clariom S Array PSR0400011265.mm.1 NM_023603.3 Refseq
Affymetrix Mouse Clariom S Array PSR0400011265.mm.1 NR_045010.1.1 Refseq
Affymetrix Mouse Clariom S Array PSR0400011265.mm.1 NR_045010.1 Refseq
Affymetrix Mouse Clariom S Array PSR0400011265.mm.1 TC0400001477.mm.1 MTA TC
Affymetrix Mouse Clariom S Array PSR0400011264.mm.1 NM_023603.3.1 Refseq
Affymetrix Mouse Clariom S Array PSR0400011264.mm.1 NM_023603.3 Refseq
Affymetrix Mouse Clariom S Array PSR0400011264.mm.1 NR_045010.1.1 Refseq
Affymetrix Mouse Clariom S Array PSR0400011264.mm.1 NR_045010.1 Refseq
Affymetrix Mouse Clariom S Array PSR0400011264.mm.1 TC0400001477.mm.1 MTA TC
Array Name Probe IDs Targets Target Type
ABI Mouse Genome Survey Microarray 325779 - -

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