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See other SMG5 GE Assays ›
Gene Symbol:
Smg5
Gene Name:
Smg-5 homolog, nonsense mediated mRNA decay factor (C. elegans)
Gene Aliases:
BC024683, mKIAA1089
Chromosome Location:
Chr.3: 88336260 - 88362338 on Build GRCm38
Species:
Mouse
Species Specific ID (Flybase ID):
-
Assay ID Mm00557483_m1
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  • Genomic Map
  • Assay Details
  • More Information

Genomic Map

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Assay Details

Gene Symbol: Smg5
Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Amplicon Length
RefSeq NM_178246.3 NP_839977.2 1 - 2 241 95
GenBank mRNA AK129286.1 - 1 - 2 220 95
AK143911.1 - 1 - 2 242 95
AK155787.1 - 1 - 2 230 95
BB869373.1 - 2 - 3 174 95
BC024683.1 - 1 - 2 193 3992000 95
BC100408.1 - 1 - 2 190 30734268 95

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More Information


Updated Mapping Information

This assay targets the same location as MTA transcript cluster(s) TC0300000724.mm.1

Set Membership:

Ambion siRNA available Amplicon length between 86 and 100 Mammalian Gene Collection Recommended Assay Mus musculus 1700 Inventoried Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Smg5

Panther Classification:

Molecular Function -

RNA metabolism protein

Gene Ontology Categories:

Function(s) Process(es)

nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
regulation of dephosphorylation
protein phosphatase 2A binding

MicroArray Probes:

Affymetrix ABI

Array Name Probe IDs Targets Target Type
Affymetrix Mouse Clariom S Array PSR0300005093.mm.1 NM_178246.3.1 Refseq
Affymetrix Mouse Clariom S Array PSR0300005093.mm.1 NM_178246.3 Refseq
Affymetrix Mouse Clariom S Array PSR0300005093.mm.1 TC0300000724.mm.1 MTA TC
Affymetrix Mouse Clariom S Array PSR0300005095.mm.1 NM_178246.3.1 Refseq
Affymetrix Mouse Clariom S Array PSR0300005095.mm.1 NM_178246.3 Refseq
Affymetrix Mouse Clariom S Array PSR0300005095.mm.1 TC0300000724.mm.1 MTA TC
Affymetrix Mouse Clariom S Array PSR0300005096.mm.1 NM_178246.3.1 Refseq
Affymetrix Mouse Clariom S Array PSR0300005096.mm.1 NM_178246.3 Refseq
Affymetrix Mouse Clariom S Array PSR0300005096.mm.1 TC0300000724.mm.1 MTA TC
Array Name Probe IDs Targets Target Type
ABI Mouse Genome Survey Microarray 655480 - -
ABI Mouse Genome Survey Microarray 758620 - -

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