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See other HDAC5 GE Assays ›
Gene Symbol:
Hdac5
Gene Name:
histone deacetylase 5
Gene Aliases:
AI426555, Hdac4, mHDA1, mKIAA0600
Chromosome Location:
Chr.11: 102195747 - 102230186 on Build GRCm38
Species:
Mouse
Species Specific ID (Flybase ID):
-
Assay ID Mm00515929_m1
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Availability Made To Order
Catalog # 4351372
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  • Genomic Map
  • Assay Details
  • More Information

Genomic Map

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Assay Details

Gene Symbol: Hdac5
Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Amplicon Length
RefSeq NM_001077696.1 NP_001071164.1 14 - 15 2398 90
NM_001284248.1 NP_001271177.1 16 - 17 2910 90
NM_001284249.1 NP_001271178.1 15 - 16 2507 90
NM_001284250.1 NP_001271179.1 14 - 15 2395 90
NM_010412.3 NP_034542.3 14 - 15 2395 90
GenBank mRNA AF006602.2 - 13 - 14 2108 90
AF207748.1 - 13 - 14 2027 90
AK122325.2 - 9 - 10 1437 90
AK139202.1 - 15 - 16 2481 90
AK145972.1 - 14 - 15 2361 90
AK146483.1 - 14 - 15 2334 90
AK155335.1 - 14 - 15 2369 90
AK156008.1 - 8 - 9 3232 90
AK157159.1 - 8 - 9 3232 90
BC023309.1 - 5 - 6 948 90
BC049926.1 - 14 - 15 2329 90
BC058554.1 - 16 - 17 2862 90
BC060609.1 - 13 - 14 2189 5720438 90

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More Information


Updated Mapping Information

This assay targets the same location as MTA transcript cluster(s) TC1100003829.mm.1

Set Membership:

Ambion siRNA available Amplicon length between 86 and 100 Mammalian Gene Collection Mus musculus Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Hdac5

Panther Classification:

Molecular Function -

histone modifying enzyme

Gene Ontology Categories:

Function(s) Process(es)

negative regulation of transcription from RNA polymerase II promoter
osteoblast development
transcription, DNA-templated
regulation of transcription, DNA-templated
transcription from RNA polymerase II promoter
protein deacetylation
inflammatory response
nervous system development
heart development
negative regulation of gene expression
regulation of myotube differentiation
negative regulation of myotube differentiation
chromatin modification
histone deacetylation
B cell differentiation
multicellular organismal response to stress
regulation of gene expression, epigenetic
B cell activation
response to cocaine
response to drug
regulation of protein binding
negative regulation of osteoblast differentiation
negative regulation of striated muscle tissue development
negative regulation of transcription, DNA-templated
positive regulation of transcription from RNA polymerase II promoter
regulation of skeletal muscle fiber development
positive regulation of sequence-specific DNA binding transcription factor activity
regulation of striated muscle cell differentiation
renal tubule morphogenesis
cellular response to fluid shear stress
negative regulation of cell migration involved in sprouting angiogenesis
positive regulation of neural precursor cell proliferation
positive regulation of stem cell proliferation
RNA polymerase III transcription factor binding
core promoter sequence-specific DNA binding
core promoter binding
transcriptional activator activity, RNA polymerase II core promoter proximal region sequence-specific binding
RNA polymerase II transcription factor binding
chromatin binding
transcription corepressor activity
histone deacetylase activity
protein kinase C binding
protein binding
transcription factor binding
hydrolase activity
protein kinase binding
histone deacetylase activity (H3-K14 specific)
NAD-dependent histone deacetylase activity (H3-K14 specific)
histone deacetylase activity (H3-K9 specific)
protein deacetylase activity
histone deacetylase activity (H4-K16 specific)
histone deacetylase binding
transcription regulatory region DNA binding
metal ion binding
NAD-dependent histone deacetylase activity (H3-K9 specific)
NAD-dependent histone deacetylase activity (H4-K16 specific)
repressing transcription factor binding
NAD-dependent histone deacetylase activity (H3-K18 specific)

MicroArray Probes:

Affymetrix

Array Name Probe IDs Targets Target Type
Affymetrix Mouse Clariom S Array PSR1100035540.mm.1 NM_001077696.1.1 Refseq
Affymetrix Mouse Clariom S Array PSR1100035540.mm.1 NM_001077696.1 Refseq
Affymetrix Mouse Clariom S Array PSR1100035540.mm.1 NM_001284248.1 Refseq
Affymetrix Mouse Clariom S Array PSR1100035540.mm.1 NM_001284249.1 Refseq
Affymetrix Mouse Clariom S Array PSR1100035540.mm.1 NM_001284250.1 Refseq
Affymetrix Mouse Clariom S Array PSR1100035540.mm.1 NM_010412.3.1 Refseq
Affymetrix Mouse Clariom S Array PSR1100035540.mm.1 NM_010412.3 Refseq
Affymetrix Mouse Clariom S Array PSR1100035540.mm.1 TC1100003829.mm.1 MTA TC

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