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See other BRCA1 GE Assays ›
Gene Symbol:
Brca1
Gene Name:
breast cancer 1
Gene Aliases:
-
Chromosome Location:
Chr.11: 101488754 - 101551956 on Build GRCm38
Species:
Mouse
Species Specific ID (Flybase ID):
-
Assay ID Mm00515386_m1
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Catalog # 4331182
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  • Genomic Map
  • Assay Details
  • More Information

Genomic Map

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Assay Details

Gene Symbol: Brca1
Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Amplicon Length
RefSeq NM_009764.3 NP_033894.3 19 - 20 5311 90
GenBank mRNA AB221610.1 - 10 - 11 2540 90
BC068303.1 - 19 - 20 5144 30431022 90
U31625.1 - 19 - 20 5168 90
U32446.1 - 19 - 20 5221 90
U35641.1 - 19 - 20 5204 90
U36475.1 - 18 - 19 5131 90
U68174.1 - 19 - 20 5215 90

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More Information


Updated Mapping Information

This assay targets the same location as MTA transcript cluster(s) TC1100003808.mm.1

Set Membership:

Ambion siRNA available Amplicon length between 86 and 100 Mammalian Gene Collection Recommended Assay Mus musculus Mouse Androgen Panel Inventoried Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Brca1

Panther Classification:

Molecular Function -

ubiquitin-protein ligase protein modifying enzyme

Gene Ontology Categories:

Function(s) Process(es)

double-strand break repair via homologous recombination
DNA replication
DNA repair
postreplication repair
double-strand break repair
DNA recombination
regulation of gene expression by genetic imprinting
lipid metabolic process
fatty acid metabolic process
fatty acid biosynthetic process
cellular response to DNA damage stimulus
cell cycle
chromosome segregation
centrosome cycle
intrinsic apoptotic signaling pathway in response to DNA damage
dosage compensation by inactivation of X chromosome
response to ionizing radiation
positive regulation of vascular endothelial growth factor production
positive regulation of gene expression
protein ubiquitination
chromosome breakage
positive regulation of protein ubiquitination
G2 DNA damage checkpoint
positive regulation of histone acetylation
negative regulation of histone acetylation
regulation of cell proliferation
chordate embryonic development
response to estrogen
regulation of DNA methylation
negative regulation of fatty acid biosynthetic process
positive regulation of DNA repair
positive regulation of angiogenesis
negative regulation of transcription, DNA-templated
positive regulation of transcription from RNA polymerase II promoter
centrosome duplication
positive regulation of histone H3-K4 methylation
negative regulation of histone H3-K4 methylation
negative regulation of histone H3-K9 methylation
positive regulation of histone H3-K9 methylation
protein autoubiquitination
positive regulation of histone H4-K20 methylation
positive regulation of cell cycle arrest
cellular response to tumor necrosis factor
cellular response to indole-3-methanol
protein K6-linked ubiquitination
negative regulation of extrinsic apoptotic signaling pathway via death domain receptors
negative regulation of reactive oxygen species metabolic process
positive regulation of histone H3-K9 acetylation
positive regulation of histone H4-K16 acetylation
DNA binding
damaged DNA binding
RNA binding
ubiquitin-protein transferase activity
zinc ion binding
UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-alanine ligase activity
ligase activity
ribosomal S6-glutamic acid ligase activity
enzyme binding
ubiquitin protein ligase binding
coenzyme F420-0 gamma-glutamyl ligase activity
coenzyme F420-2 alpha-glutamyl ligase activity
transcription regulatory region DNA binding
metal ion binding
protein-glycine ligase activity
protein-glycine ligase activity, initiating
protein-glycine ligase activity, elongating
tubulin-glycine ligase activity
protein-glutamic acid ligase activity
tubulin-glutamic acid ligase activity

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