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See other APOBEC1 GE Assays ›
Gene Symbol:
Apobec1
Gene Name:
apolipoprotein B mRNA editing enzyme, catalytic polypeptide 1
Gene Aliases:
Cdar1
Chromosome Location:
Chr.6: 122577792 - 122603041 on Build GRCm38
Species:
Mouse
Species Specific ID (Flybase ID):
-
Assay ID Mm00482895_m1
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Availability Made To Order
Catalog # 4351372
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  • Genomic Map
  • Assay Details
  • More Information

Genomic Map

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Assay Details

Gene Symbol: Apobec1
Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Amplicon Length
RefSeq NM_001134391.1 NP_001127863.1 5 - 6 548 98
NM_031159.3 NP_112436.1 5 - 6 604 98
GenBank mRNA AK146427.1 - 5 - 6 480 98
AK151799.1 - 5 - 6 476 98
AK165209.1 - 5 - 6 487 98
AK166412.1 - 5 - 6 480 98
BC003792.1 - 5 - 6 492 3494195 98
U22262.1 - 5 - 6 604 98
U22263.1 - 5 - 6 548 98
U22264.1 - 2 - 3 304 98

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More Information


Updated Mapping Information

This assay targets the same location as MTA transcript cluster(s) TC0600003071.mm.1

Set Membership:

Ambion siRNA available Amplicon length between 86 and 100 Mammalian Gene Collection Mus musculus Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Apobec1

Panther Classification:

Molecular Function -

RNA processing factor

Gene Ontology Categories:

Function(s) Process(es)

mRNA processing
response to osmotic stress
cytidine deamination
response to gamma radiation
cytidine to uridine editing
mRNA modification
regulation of cell proliferation
lipoprotein metabolic process
lipoprotein biosynthetic process
response to drug
lipoprotein transport
response to ethanol
mRNA stabilization
response to calcium ion
defense response to virus
DNA cytosine deamination
DNA demethylation
negative regulation of methylation-dependent chromatin silencing
catalytic activity
GTP cyclohydrolase activity
cytidine deaminase activity
cytosine deaminase activity
protein binding
tRNA-specific adenosine deaminase activity
zinc ion binding
hydrolase activity
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in cyclic amidines
AU-rich element binding
N-cyclopropylmelamine deaminase activity
N-cyclopropylammeline deaminase activity
N-cyclopropylammelide alkylamino hydrolase activity
2,5-diamino-6-ribitylamino-4(3H)-pyrimidinone 5'-phosphate deaminase activity
tRNA-specific adenosine-37 deaminase activity
archaeal-specific GTP cyclohydrolase activity
metal ion binding
tRNA-specific adenosine-34 deaminase activity

MicroArray Probes:

Affymetrix

Array Name Probe IDs Targets Target Type
Affymetrix Mouse Clariom S Array PSR0600023784.mm.1 NM_001134391.1.1 Refseq
Affymetrix Mouse Clariom S Array PSR0600023784.mm.1 NM_001134391.1 Refseq
Affymetrix Mouse Clariom S Array PSR0600023784.mm.1 NM_031159.3.1 Refseq
Affymetrix Mouse Clariom S Array PSR0600023784.mm.1 NM_031159.3 Refseq
Affymetrix Mouse Clariom S Array PSR0600023784.mm.1 TC0600003071.mm.1 MTA TC

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