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See other PNKP GE Assays ›
Gene Symbol:
Pnkp
Gene Name:
polynucleotide kinase 3'- phosphatase
Gene Aliases:
1810009G08Rik, PNK
Chromosome Location:
Chr.7: 44857055 - 44862929 on Build GRCm38
Species:
Mouse
Species Specific ID (Flybase ID):
-
Assay ID Mm00480673_g1
Size
Availability Made To Order
Catalog # 4351372
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  • Genomic Map
  • Assay Details
  • More Information

Genomic Map

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Assay Details

Gene Symbol: Pnkp
Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Amplicon Length
RefSeq NM_001290764.1 NP_001277693.1 13 - 14 1354 69
NM_001290766.1 NP_001277695.1 11 - 12 1338 69
NM_001290767.1 NP_001277696.1 11 - 12 1109 69
NM_021549.3 NP_067524.2 12 - 13 1446 69
GenBank mRNA AF129451.1 - 11 - 12 1104 69
AK049992.1 - 12 - 13 1249 69
AK159535.1 - 12 - 13 1211 69
AK159770.1 - 12 - 13 1211 69
AK160020.1 - 12 - 13 1211 69
AK160160.1 - 13 - 14 1351 69
AK172558.1 - 11 - 12 1143 69
BC047269.1 - 10 - 11 1388 69
BC057659.1 - 12 - 13 1248 2865792 69

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More Information


Updated Mapping Information

This assay targets the same location as MTA transcript cluster(s) TC0700000820.mm.1

Set Membership:

Ambion siRNA available Amplicon length less than or equal to 70 Mammalian Gene Collection Detect Genomic DNA Mus musculus Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Pnkp

Gene Ontology Categories:

Function(s) Process(es)

DNA repair
cellular response to DNA damage stimulus
response to oxidative stress
metabolic process
phosphorylation
dephosphorylation
DNA damage response, detection of DNA damage
nucleotide phosphorylation
DNA 3' dephosphorylation involved in DNA repair
polynucleotide 3' dephosphorylation
nucleotide binding
double-stranded DNA binding
catalytic activity
ATP binding
kinase activity
transferase activity
hydrolase activity
nucleotide kinase activity
polynucleotide 3'-phosphatase activity
ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity

MicroArray Probes:

Affymetrix

Array Name Probe IDs Targets Target Type
Affymetrix Mouse Clariom S Array PSR0700006905.mm.1 NM_021549.3 Refseq
Affymetrix Mouse Clariom S Array PSR0700006905.mm.1 TC0700000820.mm.1 MTA TC

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