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See other PNKP GE Assays ›
Gene Symbol:
Pnkp
Gene Name:
polynucleotide kinase 3'- phosphatase
Gene Aliases:
1810009G08Rik, PNK
Chromosome Location:
Chr.7: 44857055 - 44862929 on Build GRCm38
Species:
Mouse
Species Specific ID (Flybase ID):
-
Assay ID Mm00480671_g1
Size
Availability Made To Order
Catalog # 4351372
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  • Genomic Map
  • Assay Details
  • More Information

Genomic Map

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Assay Details

Gene Symbol: Pnkp
Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Amplicon Length
RefSeq NM_001290764.1 NP_001277693.1 11 - 12 1198 81
NM_001290766.1 NP_001277695.1 9 - 10 1182 81
NM_001290767.1 NP_001277696.1 9 - 10 953 81
NM_021549.3 NP_067524.2 10 - 11 1290 81
GenBank mRNA AF129451.1 - 9 - 10 948 81
AK049992.1 - 10 - 11 1093 81
AK160160.1 - 11 - 12 1195 81
AK172558.1 - 9 - 10 987 81
BC047269.1 - 8 - 9 1232 81
BC057659.1 - 10 - 11 1092 2865792 81

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More Information


Updated Mapping Information

This assay targets the same location as MTA transcript cluster(s) TC0700000820.mm.1

Set Membership:

Ambion siRNA available Amplicon length between 71 and 85 Mammalian Gene Collection Detect Genomic DNA Mus musculus Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene Pnkp

Gene Ontology Categories:

Function(s) Process(es)

DNA repair
cellular response to DNA damage stimulus
response to oxidative stress
metabolic process
phosphorylation
dephosphorylation
DNA damage response, detection of DNA damage
nucleotide phosphorylation
DNA 3' dephosphorylation involved in DNA repair
polynucleotide 3' dephosphorylation
nucleotide binding
double-stranded DNA binding
catalytic activity
ATP binding
kinase activity
transferase activity
hydrolase activity
nucleotide kinase activity
polynucleotide 3'-phosphatase activity
ATP-dependent polydeoxyribonucleotide 5'-hydroxyl-kinase activity

MicroArray Probes:

Affymetrix

Array Name Probe IDs Targets Target Type
Affymetrix Mouse Clariom S Array PSR0700006901.mm.1 NM_021549.3 Refseq
Affymetrix Mouse Clariom S Array PSR0700006901.mm.1 TC0700000820.mm.1 MTA TC

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