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See other LIG1 GE Assays ›
Gene Symbol:
LIG1
Gene Name:
DNA ligase 1
Gene Aliases:
-
Chromosome Location:
Chr.19: 48115445 - 48170603 on Build GRCh38
Species:
Human
Species Specific ID (Flybase ID):
-
Assay ID Hs04404247_m1
Size
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Catalog # 4426961
Price 373.00
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  • Genomic Map
  • Assay Details
  • More Information

Genomic Map

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Assay Details

Gene Symbol: LIG1
Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Amplicon Length
RefSeq NR_110296.1 24 - 25 3800 80
NR_135497.1 24 - 25 3803 80
NR_135498.1 22 - 23 3632 80
NR_135499.1 23 - 24 3713 80
NR_135500.1 24 - 25 3980 80
Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Transcript Location Amplicon Length
GenBankmRNA W17179.1 - 50 Chr. - - [-] on Build 80

Adjacent Gene Details

Gene name Gene Symbol Alias Distance Relative Direction Location Chromsome
Upstream phospholipase A2 group IVC PLA2G4C CPLA2-gamma -8.3kb Sense Chr. 19 - 48047843 - 48111445 on NCBI Build GRCh38
Downstream chromosome 19 open reading frame 68 C19orf68 49.3kb Anti-sense Chr. 19 - 48170662 - 48197621 on NCBI Build GRCh38

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More Information


Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC1900011060.hg.1

Set Membership:

Amplicon length between 71 and 85 Homo sapiens Probe spans exons

Gene Ontology Categories:

Function(s) Process(es)

telomere maintenance via recombination
DNA metabolic process
DNA repair
transcription-coupled nucleotide-excision repair
base-excision repair
nucleotide-excision repair, DNA gap filling
mismatch repair
anatomical structure morphogenesis
V(D)J recombination
DNA ligation involved in DNA repair
cell division
DNA biosynthetic process
Okazaki fragment processing involved in mitotic DNA replication
DNA binding
DNA ligase activity
DNA ligase (ATP) activity
ATP binding
metal ion binding

MicroArray Probes:

Affymetrix

Array Name Probe IDs Targets Target Type
Affymetrix Human Clariom D Assay PSR1900192269.hg.1 ENST00000263274.11 Ensembl
Affymetrix Human Clariom D Assay PSR1900192269.hg.1 ENST00000427526.6 Ensembl
Affymetrix Human Clariom D Assay PSR1900192269.hg.1 ENST00000536218.5 Ensembl
Affymetrix Human Clariom D Assay PSR1900192269.hg.1 ENST00000594067.5 Ensembl
Affymetrix Human Clariom D Assay PSR1900192269.hg.1 ENST00000594759.5 Ensembl
Affymetrix Human Clariom D Assay PSR1900192269.hg.1 ENST00000601091.5 Ensembl
Affymetrix Human Clariom D Assay PSR1900192269.hg.1 ENST00000613670.4 Ensembl
Affymetrix Human Clariom D Assay PSR1900192269.hg.1 NM_000234.2 Refseq
Affymetrix Human Clariom D Assay PSR1900192269.hg.1 NM_001289063.1 Refseq
Affymetrix Human Clariom D Assay PSR1900192269.hg.1 NM_001289064.1 Refseq
Affymetrix Human Clariom D Assay PSR1900192269.hg.1 NR_110296.1 Refseq
Affymetrix Human Clariom D Assay PSR1900192269.hg.1 ENST00000263274.11 Ensembl
Affymetrix Human Clariom D Assay PSR1900192269.hg.1 ENST00000427526.6 Ensembl
Affymetrix Human Clariom D Assay PSR1900192269.hg.1 ENST00000536218.5 Ensembl
Affymetrix Human Clariom D Assay PSR1900192269.hg.1 ENST00000594067.5 Ensembl
Affymetrix Human Clariom D Assay PSR1900192269.hg.1 ENST00000594759.5 Ensembl
Affymetrix Human Clariom D Assay PSR1900192269.hg.1 ENST00000601091.5 Ensembl
Affymetrix Human Clariom D Assay PSR1900192269.hg.1 ENST00000613670.4 Ensembl
Affymetrix Human Clariom D Assay PSR1900192269.hg.1 NM_000234.2 Refseq
Affymetrix Human Clariom D Assay PSR1900192269.hg.1 NM_001289063.1 Refseq
Affymetrix Human Clariom D Assay PSR1900192269.hg.1 NM_001289064.1 Refseq
Affymetrix Human Clariom D Assay PSR1900192269.hg.1 NR_110296.1 Refseq
Affymetrix Human Clariom D Assay PSR1900192269.hg.1 TC1900011060.hg.1 Clariom D TC

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