Name: [Hs04232864_s1] [RNU4ATAC]
Creator: Thermo Fisher Scientific
Keywords: [RNU4ATAC] Assay, [RNA, U4atac small nuclear (U12-dependent splicing)] Assay

Assay Details

Gene Symbol: RNU4ATAC
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NR_023343.1		1	69		98
GenBank mRNA	U62822.1	-	1	69		98

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	Transcript Location	Amplicon Length
GenBankmRNA	DA487662.1	-		60	Chr. 9 - 132821060 - 133019884 [+] on Build GRCh38	98
GenBankmRNA	DA039499.1	-		69	Chr. - - [-] on Build	98
GenBankmRNA	DW419002.1	-	1	86	Chr. 2 - 121530880 - 121531273 [+] on Build GRCh38	98
GenBankmRNA	DA697585.1	-		69	Chr. - - [-] on Build	98
GenBankmRNA	DW467487.1	-	1	86	Chr. 2 - 121530880 - 121531208 [+] on Build GRCh38	98
GenBankmRNA	DA438209.1	-		69	Chr. - - [-] on Build	98
GenBankmRNA	DB018378.1	-		69	Chr. - - [-] on Build	98

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	transcription factor CP2-like 1	TFCP2L1	CRTR1, LBP-9, LBP9	-245.7kb	Anti-sense	Chr. 2 - 121216587 - 121285210 on NCBI Build GRCh38
Downstream	NIFK antisense RNA 1	NIFK-AS1		118.6kb	Sense	Chr. 2 - 121649654 - 121728560 on NCBI Build GRCh38

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC0200009125.hg.1
This assay targets the same location as HTA transcript cluster(s) TC02000767.hg.1

Set Membership:

Amplicon length between 86 and 100

3' Most

Detect Genomic DNA

Homo sapiens

Both primers and probe map within a single exon

MicroArray Probes:

Agilent Affymetrix Illumina

Array Name	Probe IDs	Targets	Target Type
Agilent Genotypic Designed Human Whole genome gene expression profiling microarray 4x44k	GT_HS_44k_4421	-	-
Agilent Genotypic Designed Human Whole genome gene expression profiling microarray 4x44k	GT_HS_44k_4422	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P21559754	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P01444534	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P21559768	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P21559764	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P01444526	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P21559779	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P21559771	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P21559742	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P01444571	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P21559740	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P21559726	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P21559746	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P01444562	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P21559750	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P01444569	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P21559770	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P21559733	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P21559782	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P21559761	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P21559739	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P21559769	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P01444548	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P21559738	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P21559758	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P01444545	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P01444560	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P21559727	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P01444550	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P01444555	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P01444541	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P01444524	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P01444552	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P01444518	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P01444557	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P15317162	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P21559732	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P21559734	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P15317158	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P01444519	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P01444539	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P21559754	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P01444518	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P15317158	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P21559750	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P21559782	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P01444555	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P21559768	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P21559733	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P21559738	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P21559764	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P21559732	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P21559770	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P01444571	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P21559726	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P21559779	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P01444562	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P21559769	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P01444557	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P01444552	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P21559734	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P01444519	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P01444541	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P21559740	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P01444534	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P01444545	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P21559742	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P21559761	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P21559771	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P15317162	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P01444548	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P01444569	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P21559746	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P01444526	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P01444560	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P21559727	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P01444550	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P21559758	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P01444524	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P21559739	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P01444539	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P01444547	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P01444542	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P01444551	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P01444525	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P15317158	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P01444532	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P01444550	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P01444518	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P01444534	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P15317172	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P01444565	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P01444563	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P01444559	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P01444548	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P01444570	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P15317164	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P01444556	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P01444528	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P01444523	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P15317169	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P15317160	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P15317162	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P01444555	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P01444514	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P01444568	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P01444538	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P01444519	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P01444572	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P01444552	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P01444545	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P15317171	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P01444512	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Gene 1.0 ST Array	8044962	-	-
Affymetrix Human Gene 1.1 ST Array	8044961	-	-
Affymetrix Human Transcriptome Array 2.0	TC0600013760.hg.1	ENST00000516179.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0200009125.hg.1	ENST00000580972.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0200009125.hg.1	NR_023343.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1200006452.hg.1	ENST00000408512.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0500008348.hg.1	ENST00000515932.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0100014511.hg.1	ENST00000516307.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0900006967.hg.1	ENST00000516415.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR02012010.hg.1	ENST00000385771.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR02012010.hg.1	NR_023343.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR02012010.hg.1	TC02000767.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	TC1100009326.hg.1	ENST00000517226.1	Ensembl
Affymetrix Human Clariom D Assay	TC0500008348.hg.1	ENST00000515932.1	Ensembl
Affymetrix Human Clariom D Assay	TC0600013760.hg.1	ENST00000516179.1	Ensembl
Affymetrix Human Clariom D Assay	TC1200006452.hg.1	ENST00000408512.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0200163985.hg.1	ENST00000580972.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0200163985.hg.1	NR_023343.1	Refseq
Affymetrix Human Clariom D Assay	PSR0200163985.hg.1	ENST00000580972.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0200163985.hg.1	NR_023343.1	Refseq
Affymetrix Human Clariom D Assay	PSR0200163985.hg.1	TC0200009125.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	TC0200009125.hg.1	ENST00000580972.1	Ensembl
Affymetrix Human Clariom D Assay	TC0200009125.hg.1	NR_023343.1	Refseq
Affymetrix Human Clariom D Assay	TC0900006967.hg.1	ENST00000516415.1	Ensembl
Affymetrix Human Clariom D Assay	TC0100014511.hg.1	ENST00000516307.1	Ensembl
Affymetrix Human Clariom D Assay	TC1100009326.hg.1	ENST00000517226.1	Ensembl

Array Name	Probe IDs	Targets	Target Type
HumanHT-12 v4 Expression BeadChip	ILMN_3240594	NR_023343.1	human_transcriptome
HumanHT-12 V4.0 expression beadchip	ILMN_3240594	NR_023343.1	human_transcriptome
Illumina HumanHT-12 WG-DASL V4.0 expression beadchip	ILMN_3240594	NR_023343.1	human_transcriptome
Illumina HumanHT-12 WG-DASL V4.0 R2 expression beadchip	ILMN_3240594	NR_023343.1	human_transcriptome

Availability	Made To Order
Catalog #	4426961
Price	373.00
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System Message

Genomic Map