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Gene Symbol:
CASC7 AGO2
Gene Name:
cancer susceptibility candidate 7 (non-protein coding)
argonaute 2, RISC catalytic component
Gene Aliases:
LINC00980
EIF2C2, Q10
Chromosome Location:
-
Chromosome Location:
Chr.8: 140520158 - 140642406 on Build GRCh38
Species:
Human
Species Specific ID (Flybase ID):
-
-
Assay ID Hs03670146_s1
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Availability Made To Order
Catalog # 4426961
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  • Genomic Map
  • Assay Details
  • More Information

Genomic Map

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Assay Details

Gene Symbol: CASC7
Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Amplicon Length
GenBank mRNA AK092172.1 - 1 2751 91
Gene Symbol: AGO2
Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Amplicon Length
RefSeq XM_011516965.2 XP_011515267.1 19 10989 91
XM_011516966.2 XP_011515268.1 19 8730 91
XM_011516968.2 XP_011515270.2 19 8064 91
XM_017013317.1 XP_016868806.1 18 7682 91
Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Transcript Location Amplicon Length
GenBankmRNA DB323170.1 - 1 Chr. 8 - 140526669 - 140527200 [+] on Build GRCh38 91
GenBankmRNA AI733824.1 - 1 Chr. 8 - 140526669 - 140527148 [+] on Build GRCh38 91
GenBankmRNA AI263575.1 - 1 Chr. 8 - 140526669 - 140526997 [+] on Build GRCh38 91
GenBankmRNA BM464843.1 - 1 505 Chr. 8 - 140526336 - 140527256 [-] on Build GRCh38 91
GenBankmRNA AW043897.1 - 1 Chr. 8 - 140526410 - 140526809 [+] on Build GRCh38 91
GenBankmRNA CA425667.1 - 1 Chr. 8 - 140526542 - 140527196 [+] on Build GRCh38 91
GenBankmRNA AL602212.1 - 1 337 Chr. 8 - 140526488 - 140527088 [-] on Build GRCh38 91
GenBankmRNA DB327156.1 - 1 Chr. 8 - 140526669 - 140527200 [+] on Build GRCh38 91

Adjacent Gene Details

Gene name Gene Symbol Alias Distance Relative Direction Location Chromsome
Upstream chromatin accessibility complex 1 CHRAC1 CHARC1,
CHARC15,
CHRAC-1,
CHRAC-15,
CHRAC15,
YCL1
-9.5kb Anti-sense Chr. 8 - 140511298 - 140517153 on NCBI Build GRCh38
Downstream protein tyrosine kinase 2 PTK2 FADK,
FAK,
FAK1,
FRNK,
PPP1R71,
p125FAK,
pp125FAK
128.9kb Sense Chr. 8 - 140658382 - 141001313 on NCBI Build GRCh38

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More Information


Additional Information:

Based on assay re-evaluation, this assay may detect transcript(s) from off target gene(s). Please contact Tech Support if you need more information.

Set Membership:

Amplicon length between 86 and 100 3' Most Detect Genomic DNA Homo sapiens Both primers and probe map within a single exon

Panther Classification:

Molecular Function -

translation initiation factor

Gene Ontology Categories:

Function(s) Process(es)

transcription, DNA-templated
translation
translational initiation
Wnt signaling pathway, calcium modulating pathway
post-embryonic development
RNA secondary structure unwinding
miRNA metabolic process
gene silencing by RNA
pre-miRNA processing
siRNA loading onto RISC involved in RNA interference
posttranscriptional gene silencing by RNA
production of miRNAs involved in gene silencing by miRNA
miRNA mediated inhibition of translation
mRNA cleavage involved in gene silencing by miRNA
miRNA loading onto RISC involved in gene silencing by miRNA
positive regulation of transcription from RNA polymerase II promoter
negative regulation of translational initiation
phosphatidylinositol-mediated signaling
positive regulation of nuclear-transcribed mRNA poly(A) tail shortening
RNA phosphodiester bond hydrolysis, endonucleolytic
mRNA cleavage involved in gene silencing by siRNA
positive regulation of nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
RNA 7-methylguanosine cap binding
RNA polymerase II core binding
core promoter binding
double-stranded RNA binding
single-stranded RNA binding
mRNA binding
translation initiation factor activity
endoribonuclease activity
protein binding
protein C-terminus binding
siRNA binding
miRNA binding
poly(A) RNA binding
metal ion binding
endoribonuclease activity, cleaving siRNA-paired mRNA
endoribonuclease activity, cleaving miRNA-paired mRNA

MicroArray Probes:

Agilent Affymetrix

Array Name Probe IDs Targets Target Type
Agilent SurePrint G3 Human High-Resolution Discovery Microarray 1x1M 256152 - -
Agilent Whole Human Genome Microarray 4x44K v2 A_33_P3651911 - -
Agilent G4851A SurePrint G3 Hmn GE 8x60K Microarray 1909 - -
SurePrint G3 Human GE Microarray G4851A A_33_P3651911 - -
Agilent Human Genome 244K CGH Microarray (Alpha Test) A_16_P02038627 - -
Agilent Human CGH Whole Genome Microarray 1x1M (G4447A) A_16_P18513492 - -
Agilent Human CGH Whole Genome Microarray 1x1M (G4447A) A_16_P02038627 - -
Agilent Human 1B Microarray G4111A A_32_P355555 - -
Agilent SurePrint G3 Human CGH Microarray 2x400K A_16_P02038627 - -
Array Name Probe IDs Targets Target Type
Affymetrix HT HG-U133+ PM Array Plate 243304_PM_at - -
Human Genome U133 Plus 2.0 Array 243304_at - -
Human Genome U133 Plus 2.0 Array 243304_PM_at - -
Affymetrix Human Genome U133 Plus 2.0 Array 243304_at3 - -
Affymetrix Human Genome U133 Plus 2.0 Array 243304_at8 - -
Affymetrix Human Genome U133 Plus 2.0 Array 243304_at4 - -
Affymetrix Human Genome U133 Plus 2.0 Array 243304_at6 - -
Affymetrix Human Genome U133 Plus 2.0 Array 243304_at9 - -
Affymetrix Human Genome U133 Plus 2.0 Array 243304_at2 - -
Affymetrix Human Genome U133 Plus 2.0 Array 243304_at5 - -
Affymetrix Human Genome U133 Plus 2.0 Array 243304_at1 - -
Affymetrix Human Genome U133 Plus 2.0 Array 243304_at11 - -
Affymetrix Human Genome U133 Plus 2.0 Array 243304_at10 - -
Affymetrix Human Genome U133 Plus 2.0 Array 243304_at7 - -
Human Genome U95 Set 82897_at - -
Human Genome U95 Set 82897_PM_at - -
Human Genome U133 Set 243304_at - -
Human Genome U133 Set 243304_PM_at - -

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