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See other LINC01548 GE Assays ›
Gene Symbol:
LINC01548
Gene Name:
long intergenic non-protein coding RNA 1548
Gene Aliases:
C21orf54
Chromosome Location:
Chr.21: 33165470 - 33170236 on Build GRCh38
Species:
Human
Species Specific ID (Flybase ID):
-
Assay ID Hs03653952_m1
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Catalog # 4426961
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  • Genomic Map
  • Assay Details
  • More Information

Genomic Map

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Assay Details

Gene Symbol: LINC01548
Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Amplicon Length
RefSeq NR_024102.1 2 - 3 234 84
GenBank mRNA BC105115.1 - 2 - 3 234 84
BC105117.1 - 2 - 3 234 84
BX116511.1 - 2 - 3 187 84
Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Transcript Location Amplicon Length
GenBankmRNA AA400173.1 - 2 - 3 187 Chr. 21 - 33165535 - 33170189 [-] on Build GRCh38 84
GenBankmRNA AA934973.1 - 2 - 3 Chr. 21 - 33165528 - 33169823 [+] on Build GRCh38 84
GenBankmRNA AA400147.1 - 2 - 3 Chr. 21 - 33165470 - 33169802 [+] on Build GRCh38 84

Adjacent Gene Details

Gene name Gene Symbol Alias Distance Relative Direction Location Chromsome
Upstream uncharacterized LOC101928107 LOC101928107 -44.7kb Sense Chr. 21 - 33111704 - 33123700 on NCBI Build GRCh38
Downstream interferon alpha and beta receptor subunit 2 IFNAR2 IFN-R,
IFN-alpha-REC,
IFNABR,
IFNARB,
IMD45
60.1kb Anti-sense Chr. 21 - 33229895 - 33264513 on NCBI Build GRCh38

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More Information


Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC2100007981.hg.1
This assay targets the same location as HTA transcript cluster(s) TC21000407.hg.1

Set Membership:

Amplicon length between 71 and 85 Mammalian Gene Collection Homo sapiens Probe spans exons

MicroArray Probes:

Affymetrix

Array Name Probe IDs Targets Target Type
Affymetrix Human Transcriptome Array 2.0 TC2100007981.hg.1 ENST00000451980.2 Ensembl
Affymetrix Human Transcriptome Array 2.0 TC2100007981.hg.1 ENST00000451980.2 Ensembl
Affymetrix Human Transcriptome Array 2.0 TC2100007981.hg.1 ENST00000451980.2 Ensembl
Affymetrix Human Transcriptome Array 2.0 TC2100007981.hg.1 ENST00000451980.2 Ensembl
Affymetrix Human Transcriptome Array 2.0 TC2100007981.hg.1 NR_024102.1 Refseq
Affymetrix Human Transcriptome Array 2.0 TC2100007981.hg.1 NR_024102.1 Refseq
Affymetrix Human Transcriptome Array 2.0 TC2100007981.hg.1 NR_024102.1 Refseq
Affymetrix Human Transcriptome Array 2.0 TC2100007981.hg.1 NR_024102.1 Refseq
Affymetrix Human Transcriptome Array 2.0 PSR21004598.hg.1 ENST00000440586.1 Ensembl
Affymetrix Human Transcriptome Array 2.0 PSR21004598.hg.1 ENST00000451980.1 Ensembl
Affymetrix Human Transcriptome Array 2.0 PSR21004598.hg.1 NR_024102.1 Refseq
Affymetrix Human Transcriptome Array 2.0 PSR21004598.hg.1 TC21000407.hg.1 HTA TC
Affymetrix Human Clariom D Assay PSR2100153796.hg.1 ENST00000451980.2 Ensembl
Affymetrix Human Clariom D Assay PSR2100153796.hg.1 NR_024102.1 Refseq
Affymetrix Human Clariom D Assay PSR2100153796.hg.1 ENST00000451980.2 Ensembl
Affymetrix Human Clariom D Assay PSR2100153796.hg.1 NR_024102.1 Refseq
Affymetrix Human Clariom D Assay PSR2100153796.hg.1 TC2100007981.hg.1 Clariom D TC
Affymetrix Human Clariom D Assay TC2100007981.hg.1 ENST00000451980.2 Ensembl
Affymetrix Human Clariom D Assay TC2100007981.hg.1 ENST00000451980.2 Ensembl
Affymetrix Human Clariom D Assay TC2100007981.hg.1 ENST00000451980.2 Ensembl
Affymetrix Human Clariom D Assay TC2100007981.hg.1 ENST00000451980.2 Ensembl
Affymetrix Human Clariom D Assay TC2100007981.hg.1 NR_024102.1 Refseq
Affymetrix Human Clariom D Assay TC2100007981.hg.1 NR_024102.1 Refseq
Affymetrix Human Clariom D Assay TC2100007981.hg.1 NR_024102.1 Refseq
Affymetrix Human Clariom D Assay TC2100007981.hg.1 NR_024102.1 Refseq

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