Assay Details

Gene Symbol: SNORD117
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NR_003140.1		1	43		70
GenBank mRNA	AJ243200.1	-	1	43		70

Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Transcript Location	Amplicon Length
GenBankmRNA	DB234408.1	-	2	372		Chr. 6 - 31536297 - 31538854 [-] on Build GRCh38	70

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	ATP6V1G2-DDX39B readthrough (NMD candidate)	ATP6V1G2-DDX39B			Sense	Chr. 6 - 31530219 - 31546848 on NCBI Build GRCh38
Downstream	small nucleolar RNA, C/D box 84	SNORD84	U84	4.7kb	Sense	Chr. 6 - 31541101 - 31541178 on NCBI Build GRCh38

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC0600011435.hg.1
This assay targets the same location as HTA transcript cluster(s) TC06001529.hg.1, TC6_apd_hap1000080.hg.1, TC6_cox_hap2000158.hg.1, TC6_dbb_hap3000147.hg.1, TC6_mann_hap4000135.hg.1, TC6_mcf_hap5000135.hg.1, TC6_qbl_hap6000150.hg.1, TC6_ssto_hap7000130.hg.1

Set Membership:

Amplicon length less than or equal to 70

3' Most

Detect Genomic DNA

Homo sapiens

Both primers and probe map within a single exon

MicroArray Probes:

Agilent Affymetrix Illumina

Array Name	Probe IDs	Targets	Target Type
Agilent Genotypic Designed Human Whole genome gene expression profiling microarray 4x44k	GT_HS_44k_4110	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P04643610	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P04643602	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P04643603	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P24835547	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P24835559	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P04643598	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P24835556	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P04643622	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P04643624	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P24835562	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P04643614	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P24835543	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P24835565	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P24835553	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P24835558	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P04643611	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P04643620	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P24835562	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P04643610	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P24835565	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P04643603	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P04643614	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P04643624	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P24835543	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P24835558	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P24835556	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P04643620	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P24835553	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P24835559	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P04643602	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P24835547	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P04643622	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P04643611	-	-
Agilent SurePrint G3 Human Promoter Microarray 1x1M	A_17_P04643598	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P04643626	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P15800427	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P04643660	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P04643658	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P04643620	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P04643649	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P15800451	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P04643656	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P04643610	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P15800450	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P04643613	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P04643624	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P04643622	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P15800449	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P15800430	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P04643630	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P04643654	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P04643643	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P04643553	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P04643647	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P04643552	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P04643558	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P04643598	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P04643616	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P04643600	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P04643556	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P04643604	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P04643601	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P15800423	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P04643606	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P04643618	-	-
Agilent Human Whole Genome ChIP-on-Chip	A_17_P04643632	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Gene 1.0 ST Array	NR_003140_at	-	-
Affymetrix Human Gene 1.0 ST Array	8124941	-	-
Affymetrix Human Gene 1.1 ST Array	8124940	-	-
Affymetrix Human Transcriptome Array 2.0	TC0600011435.hg.1	ENST00000364915.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC0600011435.hg.1	NR_003140.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR6_mcf_hap5002502.hg.1	NR_003140.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR6_mcf_hap5002502.hg.1	TC6_mcf_hap5000135.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR6_cox_hap2002831.hg.1	NR_003140.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR6_cox_hap2002831.hg.1	TC6_cox_hap2000158.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR6_dbb_hap3002745.hg.1	NR_003140.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR6_dbb_hap3002745.hg.1	TC6_dbb_hap3000147.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR6_mann_hap4002361.hg.1	NR_003140.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR6_mann_hap4002361.hg.1	TC6_mann_hap4000135.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR6_qbl_hap6002813.hg.1	NR_003140.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR6_qbl_hap6002813.hg.1	TC6_qbl_hap6000150.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR6_ssto_hap7002501.hg.1	NR_003140.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR6_ssto_hap7002501.hg.1	TC6_ssto_hap7000130.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR06017499.hg.1	ENST00000364915.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR06017499.hg.1	NR_003140.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR06017499.hg.1	TC06001529.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR6_apd_hap1001150.hg.1	NR_003140.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR6_apd_hap1001150.hg.1	TC6_apd_hap1000080.hg.1	HTA TC
Affymetrix Human Clariom D Assay	TC0600011435.hg.1	ENST00000364915.1	Ensembl
Affymetrix Human Clariom D Assay	TC0600011435.hg.1	NR_003140.1	Refseq
Affymetrix Human Clariom D Assay	PSR0600177260.hg.1	ENST00000364915.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0600177260.hg.1	NR_003140.1	Refseq
Affymetrix Human Clariom D Assay	PSR0600177260.hg.1	ENST00000364915.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0600177260.hg.1	NR_003140.1	Refseq
Affymetrix Human Clariom D Assay	PSR0600177260.hg.1	TC0600011435.hg.1	Clariom D TC

Array Name	Probe IDs	Targets	Target Type
HumanHT-12 v4 Expression BeadChip	ILMN_3242908	NR_003140.1	human_transcriptome
HumanHT-12 v4 Expression BeadChip	ILMN_3242908	AJ243200.1	human_transcriptome
HumanHT-12 V4.0 expression beadchip	ILMN_3242908	NR_003140.1	human_transcriptome
HumanHT-12 V4.0 expression beadchip	ILMN_3242908	AJ243200.1	human_transcriptome
Illumina HumanHT-12 WG-DASL V4.0 expression beadchip	ILMN_3242908	NR_003140.1	human_transcriptome
Illumina HumanHT-12 WG-DASL V4.0 expression beadchip	ILMN_3242908	AJ243200.1	human_transcriptome
Illumina HumanHT-12 WG-DASL V4.0 R2 expression beadchip	ILMN_3242908	NR_003140.1	human_transcriptome
Illumina HumanHT-12 WG-DASL V4.0 R2 expression beadchip	ILMN_3242908	AJ243200.1	human_transcriptome

Availability	Made To Order
Catalog #	4426961
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System Message

Genomic Map