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See other SDCBP2 GE Assays ›
Gene Symbol:
SDCBP2 FKBP1A-SDCBP2
Gene Name:
syndecan binding protein 2
FKBP1A-SDCBP2 readthrough (NMD candidate)
Gene Aliases:
SITAC, SITAC18, ST-2
-
Chromosome Location:
Chr.20: 1309909 - 1329235 on Build GRCh38
Chromosome Location:
Chr.20: 1309909 - 1393172 on Build GRCh38
Species:
Human
Species Specific ID (Flybase ID):
-
-
Assay ID Hs01566696_m1
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Catalog # 4351372
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  • Genomic Map
  • Assay Details
  • More Information

Genomic Map

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Assay Details

Gene Symbol: SDCBP2
Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Amplicon Length
RefSeq NM_001199784.1 NP_001186713.1 7 - 8 85
NM_015685.5 NP_056500.2 3 - 4 85
NM_080489.4 NP_536737.3 7 - 8 85
GenBank mRNA AF131809.1 - 3 - 4 85
AF159228.1 - 7 - 8 85
AJ292244.1 - 6 - 7 85
AJ292245.1 - 3 - 4 85
BC002727.2 - 7 - 8 3633262 85
BU684857.1 - 2 - 3 619 85
Gene Symbol: FKBP1A-SDCBP2
Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Amplicon Length
RefSeq NR_037661.1 8 - 9 85

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More Information


Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC2000009964.hg.1, TC2000009966.hg.1
This assay targets the same location as HTA transcript cluster(s) TC20001740.hg.1

Set Membership:

Ambion siRNA available Amplicon length between 71 and 85 Mammalian Gene Collection Homo sapiens Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene SDCBP2
Click here to find siRNAs for Gene FKBP1A-SDCBP2

Panther Classification:

Molecular Function -

membrane trafficking regulatory protein

Gene Ontology Categories:

Function(s) Process(es)

nervous system development
intracellular signal transduction
intracellular transport
protein binding
protein C-terminus binding
identical protein binding
protein homodimerization activity
protein heterodimerization activity

MicroArray Probes:

Affymetrix

Array Name Probe IDs Targets Target Type
Affymetrix Human Transcriptome Array 2.0 PSR20007905.hg.1 ENST00000339987.3 Ensembl
Affymetrix Human Transcriptome Array 2.0 PSR20007905.hg.1 ENST00000360779.3 Ensembl
Affymetrix Human Transcriptome Array 2.0 PSR20007905.hg.1 ENST00000381808.3 Ensembl
Affymetrix Human Transcriptome Array 2.0 PSR20007905.hg.1 ENST00000381812.1 Ensembl
Affymetrix Human Transcriptome Array 2.0 PSR20007905.hg.1 ENST00000467129.1 Ensembl
Affymetrix Human Transcriptome Array 2.0 PSR20007905.hg.1 NM_001199784.1 Refseq
Affymetrix Human Transcriptome Array 2.0 PSR20007905.hg.1 NM_015685.5 Refseq
Affymetrix Human Transcriptome Array 2.0 PSR20007905.hg.1 NM_080489.4 Refseq
Affymetrix Human Transcriptome Array 2.0 PSR20007905.hg.1 TC20001740.hg.1 HTA TC
Affymetrix Human Clariom D Assay PSR2000170719.hg.1 ENST00000339987.7 Ensembl
Affymetrix Human Clariom D Assay PSR2000170719.hg.1 ENST00000360779.3 Ensembl
Affymetrix Human Clariom D Assay PSR2000170719.hg.1 ENST00000381808.7 Ensembl
Affymetrix Human Clariom D Assay PSR2000170719.hg.1 ENST00000381812.5 Ensembl
Affymetrix Human Clariom D Assay PSR2000170719.hg.1 ENST00000467129.2 Ensembl
Affymetrix Human Clariom D Assay PSR2000170719.hg.1 NM_001199784.1 Refseq
Affymetrix Human Clariom D Assay PSR2000170719.hg.1 NM_015685.5 Refseq
Affymetrix Human Clariom D Assay PSR2000170719.hg.1 NM_080489.4 Refseq
Affymetrix Human Clariom D Assay PSR2000170719.hg.1 ENST00000339987.7 Ensembl
Affymetrix Human Clariom D Assay PSR2000170719.hg.1 ENST00000360779.3 Ensembl
Affymetrix Human Clariom D Assay PSR2000170719.hg.1 ENST00000381808.7 Ensembl
Affymetrix Human Clariom D Assay PSR2000170719.hg.1 ENST00000381812.5 Ensembl
Affymetrix Human Clariom D Assay PSR2000170719.hg.1 ENST00000467129.2 Ensembl
Affymetrix Human Clariom D Assay PSR2000170719.hg.1 NM_001199784.1 Refseq
Affymetrix Human Clariom D Assay PSR2000170719.hg.1 NM_015685.5 Refseq
Affymetrix Human Clariom D Assay PSR2000170719.hg.1 NM_080489.4 Refseq
Affymetrix Human Clariom D Assay PSR2000170719.hg.1 TC2000009964.hg.1 Clariom D TC
Affymetrix Human Clariom D Assay PSR2000170781.hg.1 NR_037661.1 Refseq
Affymetrix Human Clariom D Assay PSR2000170781.hg.1 NR_037661.1 Refseq
Affymetrix Human Clariom D Assay PSR2000170781.hg.1 TC2000009966.hg.1 Clariom D TC

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