Name: [Hs01122655_s1] [MCF2L-AS1]
Creator: Thermo Fisher Scientific
Keywords: [MCF2L-AS1] Assay, [MCF2L antisense RNA 1] Assay

Assay Details

Gene Symbol: MCF2L-AS1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NR_034002.1		1	963		61
GenBank mRNA	BC064982.1	-		1084		61
	BC080517.1	-		1084		61
	BQ012856.1	-	1			61

Interrogated Sequence		Translated Protein	Exon Boundary	Transcript Location	Amplicon Length
GenBankmRNA	AI220122.1	-	1	Chr. 13 - 112967484 - 112967723 [+] on Build GRCh38	61
GenBankmRNA	BE293512.1	-		Chr. - - [-] on Build	61
GenBankmRNA	BQ012643.1	-	1	Chr. 13 - 112967484 - 112967945 [+] on Build GRCh38	61
GenBankmRNA	BQ011895.1	-	1	Chr. 13 - 112967484 - 112967746 [+] on Build GRCh38	61
GenBankmRNA	BE293835.1	-	1	Chr. 13 - 112967599 - 112967923 [+] on Build GRCh38	61
GenBankmRNA	AI734962.1	-	1	Chr. 13 - 112967542 - 112968117 [+] on Build GRCh38	61
GenBankmRNA	AI693958.1	-	1	Chr. 13 - 112967482 - 112967998 [+] on Build GRCh38	61
GenBankmRNA	AI188375.1	-	1	Chr. 13 - 112967484 - 112967912 [+] on Build GRCh38	61
GenBankmRNA	BQ012369.1	-	1	Chr. 13 - 112967484 - 112967923 [+] on Build GRCh38	61
GenBankmRNA	HY225296.1	-	1	Chr. 13 - 112967483 - 112967907 [+] on Build GRCh38	61
GenBankmRNA	HY264536.1	-	1	Chr. 13 - 112967482 - 112967967 [+] on Build GRCh38	61
GenBankmRNA	CA310981.1	-	1	Chr. 13 - 112967509 - 112968824 [+] on Build GRCh38	61

Adjacent Gene Details

	Gene name	Gene Symbol	Alias	Distance	Relative Direction	Location Chromsome
Upstream	MCF.2 cell line derived transforming sequence like	MCF2L	ARHGEF14, DBS, OST		Sense	Chr. 13 - 112894378 - 113099739 on NCBI Build GRCh38
Downstream	coagulation factor VII	F7	SPCA	137.9kb	Sense	Chr. 13 - 113105773 - 113120681 on NCBI Build GRCh38

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC1300009879.hg.1
This assay targets the same location as HTA transcript cluster(s) TC13000890.hg.1

Set Membership:

Amplicon length less than or equal to 70

3' Most

Mammalian Gene Collection

Detect Genomic DNA

Homo sapiens

1700

Both primers and probe map within a single exon

MicroArray Probes:

Agilent Affymetrix ArrayStar ABI

Array Name	Probe IDs	Targets	Target Type
Agilent Genotypic Designed Human Whole genome gene expression profiling microarray 4x44k	GT_44k_32_P147622	-	-
Agilent Genotypic Designed Human Whole genome gene expression profiling microarray 4x44k	GT_44k_23_P44088	-	-
Agilent Whole Human Genome Oligo Microarray 4x44K	18683	-	-
Agilent Whole Human Genome Oligo Microarray 4x44K	29508	-	-
Agilent G4851A SurePrint G3 Hmn GE 8x60K Microarray	18516	-	-
Agilent Whole Human Genome Microarray 4x44K v2	A_32_P147622	-	-
Whole Human Genome Oligo Microarray G4112A	A_23_P44088	-	-
Agilent Whole Human Genome Microarray 4x44K G4112F	A_23_P44088	-	-
Agilent Human CGH Whole Genome Microarray 1x1M (G4447A)	A_16_P19964988	-	-
Agilent Human 1B Microarray G4111A	A_32_P147622	-	-

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	TC1300009879.hg.1	ENST00000446789.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1300009879.hg.1	ENST00000446789.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1300009879.hg.1	ENST00000446789.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1300009879.hg.1	ENST00000446789.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1300009879.hg.1	ENST00000446789.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	TC1300009879.hg.1	NR_034002.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1300009879.hg.1	NR_034002.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1300009879.hg.1	NR_034002.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1300009879.hg.1	NR_034002.1	Refseq
Affymetrix Human Transcriptome Array 2.0	TC1300009879.hg.1	NR_034002.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR13009923.hg.1	NR_034002.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR13009923.hg.1	TC13000890.hg.1	HTA TC
Affymetrix Human Clariom D Assay	PSR1300165774.hg.1	ENST00000446789.2	Ensembl
Affymetrix Human Clariom D Assay	PSR1300165774.hg.1	NR_034002.1	Refseq
Affymetrix Human Clariom D Assay	PSR1300165774.hg.1	ENST00000446789.2	Ensembl
Affymetrix Human Clariom D Assay	PSR1300165774.hg.1	NR_034002.1	Refseq
Affymetrix Human Clariom D Assay	PSR1300165774.hg.1	TC1300009879.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR1300165773.hg.1	ENST00000446789.2	Ensembl
Affymetrix Human Clariom D Assay	PSR1300165773.hg.1	NR_034002.1	Refseq
Affymetrix Human Clariom D Assay	PSR1300165773.hg.1	ENST00000446789.2	Ensembl
Affymetrix Human Clariom D Assay	PSR1300165773.hg.1	NR_034002.1	Refseq
Affymetrix Human Clariom D Assay	PSR1300165773.hg.1	TC1300009879.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	TC1300009879.hg.1	ENST00000446789.2	Ensembl
Affymetrix Human Clariom D Assay	TC1300009879.hg.1	ENST00000446789.2	Ensembl
Affymetrix Human Clariom D Assay	TC1300009879.hg.1	ENST00000446789.2	Ensembl
Affymetrix Human Clariom D Assay	TC1300009879.hg.1	ENST00000446789.2	Ensembl
Affymetrix Human Clariom D Assay	TC1300009879.hg.1	ENST00000446789.2	Ensembl
Affymetrix Human Clariom D Assay	TC1300009879.hg.1	NR_034002.1	Refseq
Affymetrix Human Clariom D Assay	TC1300009879.hg.1	NR_034002.1	Refseq
Affymetrix Human Clariom D Assay	TC1300009879.hg.1	NR_034002.1	Refseq
Affymetrix Human Clariom D Assay	TC1300009879.hg.1	NR_034002.1	Refseq
Affymetrix Human Clariom D Assay	TC1300009879.hg.1	NR_034002.1	Refseq

Availability	Made To Order
Catalog #	4426961
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Array Name	Probe IDs	Targets	Target Type
Arraystar Human LncRNA microarray V2.0	ASHG19A3A049857	-	-
Arraystar Human LncRNA microarray V2.0	ASHG19A3A049858	-	-
Arraystar Human LncRNA microarray V2.0	ASHG19A3A049857	-	-
Arraystar Human LncRNA microarray V2.0	ASHG19A3A049858	-	-

System Message

Genomic Map