Assay Details

Gene Symbol: RIMS1
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001168407.1	NP_001161879.1	16 - 17	2011		137
	NM_001168408.1	NP_001161880.1	15 - 16			65
	NM_001168409.1	NP_001161881.1	16 - 17	1799		137
	NM_001168410.1	NP_001161882.1	16 - 17	2086		137
	XM_005248688.3	XP_005248745.1	20 - 21			65
	XM_011535604.2	XP_011533906.2	21 - 22	3534		137
	XM_011535615.2	XP_011533917.2	20 - 21			65
	XM_017010517.1	XP_016866006.1	21 - 22	3537		137
	XM_017010518.1	XP_016866007.1	21 - 22	3534		137
	XM_017010520.1	XP_016866009.1	20 - 21			65
	XM_017010522.1	XP_016866011.1	21 - 22	3537		137
	XM_017010523.1	XP_016866012.1	21 - 22	3537		137
	XM_017010524.1	XP_016866013.1	20 - 21			65
	XM_017010527.1	XP_016866016.1	20 - 21			65
	XM_017010530.1	XP_016866019.1	21 - 22	3537		137
	XM_017010531.1	XP_016866020.1	21 - 22	3534		137
	XM_017010532.1	XP_016866021.1	20 - 21			65
	XM_017010537.1	XP_016866026.1	15 - 16			65
	XM_017010538.1	XP_016866027.1	16 - 17	2215		137
	XM_017010539.1	XP_016866028.1	16 - 17	2102		137
	XM_017010540.1	XP_016866029.1	15 - 16			65
	XM_017010541.1	XP_016866030.1	15 - 16			65
	XM_017010542.1	XP_016866031.1	15 - 16			65
	XM_017010543.1	XP_016866032.1	15 - 16			65
	XM_017010546.1	XP_016866035.1	15 - 16			65
	XM_017010547.1	XP_016866036.1	15 - 16			65
	XM_017010552.1	XP_016866041.1	16 - 17	2338		137
	XM_017010553.1	XP_016866042.1	16 - 17	2335		137
	XM_017010554.1	XP_016866043.1	15 - 16			65
	XM_017010557.1	XP_016866046.1	3 - 4			65
	XM_017010558.1	XP_016866047.1	3 - 4	230		137
GenBank mRNA	AB051866.1	-	21 - 22			65
	AF263305.1	-	9 - 10			65
	AF263306.1	-	8 - 9			65
	AF263309.1	-	8 - 9			65
	AK293828.1	-	15 - 16			65
	AK294868.1	-	16 - 17	2011		137
	AK295001.1	-	15 - 16			65
	AK296303.1	-	16 - 17	1855		137
	AK309185.1	-	16 - 17	1799		137
	AK316108.1	-	16 - 17	1812		137

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC0600008505.hg.1
This assay targets the same location as HTA transcript cluster(s) TC06000726.hg.1

Additional Information:

This assay is in the 5'UTR region of the XM_017010557.1,XM_017010558.1 transcripts.

Set Membership:

Amplicon length less than or equal to 70

Amplicon length greater than or equal to 101

Homo sapiens

Probe spans exons

Panther Classification:

Molecular Function -

membrane traffic protein

Gene Ontology Categories:

Function(s) Process(es)

MicroArray Probes:

Affymetrix

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	PSR06008664.hg.1	ENST00000264839.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR06008664.hg.1	ENST00000346609.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR06008664.hg.1	ENST00000348717.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR06008664.hg.1	ENST00000349908.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR06008664.hg.1	ENST00000350827.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR06008664.hg.1	ENST00000352008.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR06008664.hg.1	ENST00000401910.3	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR06008664.hg.1	ENST00000425662.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR06008664.hg.1	ENST00000491071.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR06008664.hg.1	ENST00000517827.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR06008664.hg.1	ENST00000517960.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR06008664.hg.1	ENST00000518273.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR06008664.hg.1	ENST00000520567.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR06008664.hg.1	ENST00000521978.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR06008664.hg.1	ENST00000522291.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR06008664.hg.1	ENST00000523963.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR06008664.hg.1	ENST00000538414.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR06008664.hg.1	NM_001168407.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR06008664.hg.1	NM_001168408.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR06008664.hg.1	NM_001168409.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR06008664.hg.1	NM_001168410.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR06008664.hg.1	NM_014989.5	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR06008664.hg.1	TC06000726.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR06008662.hg.1	ENST00000401910.3	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR06008662.hg.1	ENST00000425662.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR06008662.hg.1	ENST00000517827.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR06008662.hg.1	ENST00000521978.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR06008662.hg.1	ENST00000538414.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR06008662.hg.1	NM_001168407.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR06008662.hg.1	NM_001168409.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR06008662.hg.1	NM_001168410.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR06008662.hg.1	NM_014989.5	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR06008662.hg.1	TC06000726.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR06008666.hg.1	ENST00000264839.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR06008666.hg.1	ENST00000348717.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR06008666.hg.1	ENST00000350827.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR06008666.hg.1	ENST00000352008.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR06008666.hg.1	ENST00000401910.3	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR06008666.hg.1	ENST00000491071.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR06008666.hg.1	ENST00000517960.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR06008666.hg.1	ENST00000521978.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR06008666.hg.1	ENST00000538414.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR06008666.hg.1	NM_001168407.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR06008666.hg.1	NM_014989.5	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR06008666.hg.1	TC06000726.hg.1	HTA TC
Affymetrix Human Clariom D Assay	PSR0600159119.hg.1	ENST00000264839.11	Ensembl
Affymetrix Human Clariom D Assay	PSR0600159119.hg.1	ENST00000370420.8	Ensembl
Affymetrix Human Clariom D Assay	PSR0600159119.hg.1	ENST00000401910.7	Ensembl
Affymetrix Human Clariom D Assay	PSR0600159119.hg.1	ENST00000425662.6	Ensembl
Affymetrix Human Clariom D Assay	PSR0600159119.hg.1	ENST00000453976.6	Ensembl
Affymetrix Human Clariom D Assay	PSR0600159119.hg.1	ENST00000463023.6	Ensembl
Affymetrix Human Clariom D Assay	PSR0600159119.hg.1	ENST00000491071.6	Ensembl
Affymetrix Human Clariom D Assay	PSR0600159119.hg.1	ENST00000517433.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0600159119.hg.1	ENST00000517827.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0600159119.hg.1	ENST00000517960.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0600159119.hg.1	ENST00000518273.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0600159119.hg.1	ENST00000520567.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0600159119.hg.1	ENST00000521978.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0600159119.hg.1	ENST00000522211.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0600159119.hg.1	ENST00000522291.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0600159119.hg.1	ENST00000523963.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0600159119.hg.1	NM_001168407.1	Refseq
Affymetrix Human Clariom D Assay	PSR0600159119.hg.1	NM_001168408.1	Refseq
Affymetrix Human Clariom D Assay	PSR0600159119.hg.1	NM_001168409.1	Refseq
Affymetrix Human Clariom D Assay	PSR0600159119.hg.1	NM_001168410.1	Refseq
Affymetrix Human Clariom D Assay	PSR0600159119.hg.1	NM_014989.5	Refseq
Affymetrix Human Clariom D Assay	PSR0600159119.hg.1	ENST00000264839.11	Ensembl
Affymetrix Human Clariom D Assay	PSR0600159119.hg.1	ENST00000370420.8	Ensembl
Affymetrix Human Clariom D Assay	PSR0600159119.hg.1	ENST00000401910.7	Ensembl
Affymetrix Human Clariom D Assay	PSR0600159119.hg.1	ENST00000425662.6	Ensembl
Affymetrix Human Clariom D Assay	PSR0600159119.hg.1	ENST00000453976.6	Ensembl
Affymetrix Human Clariom D Assay	PSR0600159119.hg.1	ENST00000463023.6	Ensembl
Affymetrix Human Clariom D Assay	PSR0600159119.hg.1	ENST00000491071.6	Ensembl
Affymetrix Human Clariom D Assay	PSR0600159119.hg.1	ENST00000517433.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0600159119.hg.1	ENST00000517827.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0600159119.hg.1	ENST00000517960.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0600159119.hg.1	ENST00000518273.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0600159119.hg.1	ENST00000520567.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0600159119.hg.1	ENST00000521978.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0600159119.hg.1	ENST00000522211.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0600159119.hg.1	ENST00000522291.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0600159119.hg.1	ENST00000523963.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0600159119.hg.1	NM_001168407.1	Refseq
Affymetrix Human Clariom D Assay	PSR0600159119.hg.1	NM_001168408.1	Refseq
Affymetrix Human Clariom D Assay	PSR0600159119.hg.1	NM_001168409.1	Refseq
Affymetrix Human Clariom D Assay	PSR0600159119.hg.1	NM_001168410.1	Refseq
Affymetrix Human Clariom D Assay	PSR0600159119.hg.1	NM_014989.5	Refseq
Affymetrix Human Clariom D Assay	PSR0600159119.hg.1	TC0600008505.hg.1	Clariom D TC

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Genomic Map