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See other KDM3A GE Assays ›
Gene Symbol:
KDM3A
Gene Name:
lysine demethylase 3A
Gene Aliases:
JHDM2A, JHMD2A, JMJD1, JMJD1A, TSGA
Chromosome Location:
Chr.2: 86440647 - 86492716 on Build GRCh38
Species:
Human
Species Specific ID (Flybase ID):
-
Assay ID Hs01029791_g1
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Catalog # 4351372
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  • Genomic Map
  • Assay Details
  • More Information

Genomic Map

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Assay Details

Gene Symbol: KDM3A
Interrogated Sequence Translated Protein Exon Boundary Assay Location IMAGE Clone ID Amplicon Length
RefSeq NM_001146688.1 NP_001140160.1 20 - 21 3235 69
NM_018433.5 NP_060903.2 20 - 21 3504 69
XM_006712051.3 XP_006712114.1 19 - 20 3202 69
XM_017004493.1 XP_016859982.1 20 - 21 3523 69
XM_017004494.1 XP_016859983.1 21 - 22 3346 69
GenBank mRNA AB018285.2 - 20 - 21 3267 69
AK074314.1 - 6 - 7 901 69
AK304276.1 - 18 - 19 3021 69
AL832150.1 - 17 - 18 5183 69
BC038297.2 - 20 - 21 3281 69
BX640698.1 - 20 - 21 3305 69
BX647271.1 - 20 - 21 3273 69
BX647752.1 - 20 - 21 3333 69
BX648841.1 - 20 - 21 3236 69
BX649109.1 - 17 - 18 6137 69
CR749581.1 - 20 - 21 3272 69

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More Information


Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC0200008291.hg.1
This assay targets the same location as HTA transcript cluster(s) TC02000524.hg.1

Set Membership:

Ambion siRNA available Amplicon length less than or equal to 70 Mammalian Gene Collection Detect Genomic DNA Homo sapiens Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene KDM3A

Panther Classification:

Molecular Function -

histone modifying enzyme

Gene Ontology Categories:

Function(s) Process(es)

response to hypoxia
transcription, DNA-templated
spermatid nucleus elongation
male gonad development
hormone-mediated signaling pathway
androgen receptor signaling pathway
histone H3-K9 demethylation
histone H3-K9 dimethylation
positive regulation of transcription, DNA-templated
positive regulation of transcription from RNA polymerase II promoter
formaldehyde biosynthetic process
negative regulation of histone H3-K9 methylation
oxidation-reduction process
regulation of stem cell population maintenance
regulation of stem cell differentiation
transcription regulatory region sequence-specific DNA binding
core promoter binding
transcription factor activity, sequence-specific DNA binding
iron ion binding
histone demethylase activity
androgen receptor binding
dioxygenase activity

MicroArray Probes:

Affymetrix

Array Name Probe IDs Targets Target Type
Affymetrix Human Transcriptome Array 2.0 PSR02008185.hg.1 ENST00000312912.5 Ensembl
Affymetrix Human Transcriptome Array 2.0 PSR02008185.hg.1 ENST00000409064.1 Ensembl
Affymetrix Human Transcriptome Array 2.0 PSR02008185.hg.1 ENST00000409556.1 Ensembl
Affymetrix Human Transcriptome Array 2.0 PSR02008185.hg.1 ENST00000540058.1 Ensembl
Affymetrix Human Transcriptome Array 2.0 PSR02008185.hg.1 ENST00000542128.1 Ensembl
Affymetrix Human Transcriptome Array 2.0 PSR02008185.hg.1 NM_001146688.1 Refseq
Affymetrix Human Transcriptome Array 2.0 PSR02008185.hg.1 NM_018433.5 Refseq
Affymetrix Human Transcriptome Array 2.0 PSR02008185.hg.1 TC02000524.hg.1 HTA TC
Affymetrix Human Clariom D Assay PSR0200157634.hg.1 ENST00000312912.9 Ensembl
Affymetrix Human Clariom D Assay PSR0200157634.hg.1 ENST00000409064.5 Ensembl
Affymetrix Human Clariom D Assay PSR0200157634.hg.1 ENST00000409556.5 Ensembl
Affymetrix Human Clariom D Assay PSR0200157634.hg.1 ENST00000441719.5 Ensembl
Affymetrix Human Clariom D Assay PSR0200157634.hg.1 ENST00000462197.1 Ensembl
Affymetrix Human Clariom D Assay PSR0200157634.hg.1 ENST00000542128.5 Ensembl
Affymetrix Human Clariom D Assay PSR0200157634.hg.1 NM_001146688.1 Refseq
Affymetrix Human Clariom D Assay PSR0200157634.hg.1 NM_018433.5 Refseq
Affymetrix Human Clariom D Assay PSR0200157634.hg.1 ENST00000312912.9 Ensembl
Affymetrix Human Clariom D Assay PSR0200157634.hg.1 ENST00000409064.5 Ensembl
Affymetrix Human Clariom D Assay PSR0200157634.hg.1 ENST00000409556.5 Ensembl
Affymetrix Human Clariom D Assay PSR0200157634.hg.1 ENST00000441719.5 Ensembl
Affymetrix Human Clariom D Assay PSR0200157634.hg.1 ENST00000462197.1 Ensembl
Affymetrix Human Clariom D Assay PSR0200157634.hg.1 ENST00000542128.5 Ensembl
Affymetrix Human Clariom D Assay PSR0200157634.hg.1 NM_001146688.1 Refseq
Affymetrix Human Clariom D Assay PSR0200157634.hg.1 NM_018433.5 Refseq
Affymetrix Human Clariom D Assay PSR0200157634.hg.1 TC0200008291.hg.1 Clariom D TC

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