Assay Details

Gene Symbol: PCDH9
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001318372.1	NP_001305301.1	1 - 2	562		95
	NM_001318373.1	NP_001305302.1	1 - 2	562		95
	NM_001318374.1	NP_001305303.1	1 - 2	562		95
	NM_020403.4	NP_065136.1	1 - 2	562		95
	NM_203487.2	NP_982354.1	1 - 2	562		95
	XM_005266408.3	XP_005266465.1	1 - 2	562		95
	XM_011535099.2	XP_011533401.1	1 - 2	562		95
	XM_017020620.1	XP_016876109.1	1 - 2	562		95
GenBank mRNA	AK054661.1	-	1 - 2	562		95
	BC150296.1	-	1 - 2	671	8860363	95
	BX537422.1	-	1 - 2	560		95
	DA497692.1	-	1 - 2	84		95

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC1300009165.hg
This assay targets the same location as HTA transcript cluster(s) TC13000717.hg

Additional Information:

This assay is in the 5'UTR region of the BC150296.1,BX537422.1,NM_001318372.1,NM_001318373.1,NM_001318374.1,NM_020403.4,NM_203487.2,XM_005266408.3,XM_011535099.2,XM_017020620.1 transcripts.

Set Membership:

Ambion siRNA available

Amplicon length between 86 and 100

3' Most

Mammalian Gene Collection

Homo sapiens

Inventoried

Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene PCDH9

Panther Classification:

Molecular Function -

cadherin

Gene Ontology Categories:

Function(s) Process(es)

MicroArray Probes:

Affymetrix

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	PSR13008295.hg.1	ENST00000377865.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR13008295.hg.1	ENST00000544246.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR13008295.hg.1	NM_203487.2	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR13008295.hg.1	TC13000717.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR13008300.hg.1	ENST00000377861.3	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR13008300.hg.1	ENST00000456367.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR13008300.hg.1	ENST00000544246.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR13008300.hg.1	NM_020403.4	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR13008300.hg.1	NM_203487.2	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR13008300.hg.1	TC13000717.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR13008298.hg.1	ENST00000328454.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR13008298.hg.1	ENST00000377861.3	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR13008298.hg.1	ENST00000377865.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR13008298.hg.1	ENST00000456367.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR13008298.hg.1	ENST00000544246.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR13008298.hg.1	NM_020403.4	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR13008298.hg.1	NM_203487.2	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR13008298.hg.1	TC13000717.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR13008299.hg.1	ENST00000377861.3	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR13008299.hg.1	ENST00000377865.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR13008299.hg.1	ENST00000456367.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR13008299.hg.1	ENST00000544246.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR13008299.hg.1	NM_020403.4	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR13008299.hg.1	NM_203487.2	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR13008299.hg.1	TC13000717.hg.1	HTA TC
Affymetrix Human Transcriptome Array 2.0	PSR13008301.hg.1	ENST00000377861.3	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR13008301.hg.1	ENST00000456367.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR13008301.hg.1	ENST00000544246.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR13008301.hg.1	NM_020403.4	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR13008301.hg.1	NM_203487.2	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR13008301.hg.1	TC13000717.hg.1	HTA TC
Affymetrix Human Clariom D Assay	PSR1300161787.hg.1	ENST00000377861.4	Ensembl
Affymetrix Human Clariom D Assay	PSR1300161787.hg.1	ENST00000377865.6	Ensembl
Affymetrix Human Clariom D Assay	PSR1300161787.hg.1	ENST00000456367.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1300161787.hg.1	ENST00000544246.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1300161787.hg.1	NM_020403.4	Refseq
Affymetrix Human Clariom D Assay	PSR1300161787.hg.1	NM_203487.2	Refseq
Affymetrix Human Clariom D Assay	PSR1300161787.hg.1	ENST00000377861.4	Ensembl
Affymetrix Human Clariom D Assay	PSR1300161787.hg.1	ENST00000377865.6	Ensembl
Affymetrix Human Clariom D Assay	PSR1300161787.hg.1	ENST00000456367.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1300161787.hg.1	ENST00000544246.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1300161787.hg.1	NM_020403.4	Refseq
Affymetrix Human Clariom D Assay	PSR1300161787.hg.1	NM_203487.2	Refseq
Affymetrix Human Clariom D Assay	PSR1300161787.hg.1	TC1300009165.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR1300161790.hg.1	ENST00000377861.4	Ensembl
Affymetrix Human Clariom D Assay	PSR1300161790.hg.1	ENST00000544246.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1300161790.hg.1	NM_020403.4	Refseq
Affymetrix Human Clariom D Assay	PSR1300161790.hg.1	NM_203487.2	Refseq
Affymetrix Human Clariom D Assay	PSR1300161790.hg.1	ENST00000377861.4	Ensembl
Affymetrix Human Clariom D Assay	PSR1300161790.hg.1	ENST00000544246.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1300161790.hg.1	NM_020403.4	Refseq
Affymetrix Human Clariom D Assay	PSR1300161790.hg.1	NM_203487.2	Refseq
Affymetrix Human Clariom D Assay	PSR1300161790.hg.1	TC1300009165.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR1300161786.hg.1	ENST00000377861.4	Ensembl
Affymetrix Human Clariom D Assay	PSR1300161786.hg.1	ENST00000377861.4	Ensembl
Affymetrix Human Clariom D Assay	PSR1300161786.hg.1	TC1300009165.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR1300161780.hg.1	ENST00000377865.6	Ensembl
Affymetrix Human Clariom D Assay	PSR1300161780.hg.1	ENST00000456367.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1300161780.hg.1	ENST00000614931.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1300161780.hg.1	NM_203487.2	Refseq
Affymetrix Human Clariom D Assay	PSR1300161780.hg.1	ENST00000377865.6	Ensembl
Affymetrix Human Clariom D Assay	PSR1300161780.hg.1	ENST00000456367.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1300161780.hg.1	ENST00000614931.1	Ensembl
Affymetrix Human Clariom D Assay	PSR1300161780.hg.1	NM_203487.2	Refseq
Affymetrix Human Clariom D Assay	PSR1300161780.hg.1	TC1300009165.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR1300161788.hg.1	ENST00000377861.4	Ensembl
Affymetrix Human Clariom D Assay	PSR1300161788.hg.1	ENST00000377865.6	Ensembl
Affymetrix Human Clariom D Assay	PSR1300161788.hg.1	ENST00000456367.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1300161788.hg.1	ENST00000544246.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1300161788.hg.1	NM_020403.4	Refseq
Affymetrix Human Clariom D Assay	PSR1300161788.hg.1	NM_203487.2	Refseq
Affymetrix Human Clariom D Assay	PSR1300161788.hg.1	ENST00000377861.4	Ensembl
Affymetrix Human Clariom D Assay	PSR1300161788.hg.1	ENST00000377865.6	Ensembl
Affymetrix Human Clariom D Assay	PSR1300161788.hg.1	ENST00000456367.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1300161788.hg.1	ENST00000544246.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1300161788.hg.1	NM_020403.4	Refseq
Affymetrix Human Clariom D Assay	PSR1300161788.hg.1	NM_203487.2	Refseq
Affymetrix Human Clariom D Assay	PSR1300161788.hg.1	TC1300009165.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR1300161789.hg.1	ENST00000377861.4	Ensembl
Affymetrix Human Clariom D Assay	PSR1300161789.hg.1	ENST00000377865.6	Ensembl
Affymetrix Human Clariom D Assay	PSR1300161789.hg.1	ENST00000456367.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1300161789.hg.1	ENST00000544246.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1300161789.hg.1	NM_020403.4	Refseq
Affymetrix Human Clariom D Assay	PSR1300161789.hg.1	NM_203487.2	Refseq
Affymetrix Human Clariom D Assay	PSR1300161789.hg.1	ENST00000377861.4	Ensembl
Affymetrix Human Clariom D Assay	PSR1300161789.hg.1	ENST00000377865.6	Ensembl
Affymetrix Human Clariom D Assay	PSR1300161789.hg.1	ENST00000456367.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1300161789.hg.1	ENST00000544246.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1300161789.hg.1	NM_020403.4	Refseq
Affymetrix Human Clariom D Assay	PSR1300161789.hg.1	NM_203487.2	Refseq
Affymetrix Human Clariom D Assay	PSR1300161789.hg.1	TC1300009165.hg.1	Clariom D TC
Affymetrix Human Clariom D Assay	PSR1300161791.hg.1	ENST00000377861.4	Ensembl
Affymetrix Human Clariom D Assay	PSR1300161791.hg.1	ENST00000544246.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1300161791.hg.1	ENST00000377861.4	Ensembl
Affymetrix Human Clariom D Assay	PSR1300161791.hg.1	ENST00000544246.5	Ensembl
Affymetrix Human Clariom D Assay	PSR1300161791.hg.1	TC1300009165.hg.1	Clariom D TC

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Catalog #	4331182
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Genomic Map