Assay Details

Gene Symbol: CAST
Interrogated Sequence		Translated Protein	Exon Boundary	Assay Location	IMAGE Clone ID	Amplicon Length
RefSeq	NM_001190442.1	NP_001177371.1	7 - 8	487		97
	NM_001284213.2	NP_001271142.1	4 - 5	284		97
	NM_173060.3	NP_775083.1	4 - 5	284		97
	XM_006714696.3	XP_006714759.1	8 - 9	590		97
	XM_006714697.3	XP_006714760.1	7 - 8	607		97
	XM_006714698.3	XP_006714761.1	7 - 8	607		97
	XM_006714699.3	XP_006714762.1	7 - 8	531		97
	XM_006714701.3	XP_006714764.1	6 - 7	566		97
	XM_006714703.3	XP_006714766.1	6 - 7	566		97
	XM_006714704.3	XP_006714767.1	6 - 7	475		97
	XM_006714707.3	XP_006714770.1	5 - 6	353		97
	XM_006714708.3	XP_006714771.1	5 - 6	352		97
	XM_006714710.3	XP_006714773.1	4 - 5	270		97
	XM_011543654.2	XP_011541956.1	7 - 8	607		97
	XM_011543655.2	XP_011541957.1	7 - 8	607		97
	XM_011543656.2	XP_011541958.1	6 - 7	551		97
	XM_011543657.2	XP_011541959.1	6 - 7	433		97
	XM_011543658.2	XP_011541960.1	4 - 5	286		97
	XM_017009911.1	XP_016865400.1	7 - 8	607		97
	XM_017009912.1	XP_016865401.1	8 - 9	618		97
	XM_017009915.1	XP_016865404.1	7 - 8	552		97
	XM_017009916.1	XP_016865405.1	6 - 7	566		97
	XM_017009917.1	XP_016865406.1	7 - 8	523		97
	XM_017009919.1	XP_016865408.1	7 - 8	607		97
	XM_017009920.1	XP_016865409.1	6 - 7	433		97
	XM_017009921.1	XP_016865410.1	6 - 7	450		97
	XM_017009927.1	XP_016865416.1	5 - 6	352		97
	XM_017009928.1	XP_016865417.1	5 - 6	390		97
	XM_017009929.1	XP_016865418.1	4 - 5	270		97
	XM_017009931.1	XP_016865420.1	4 - 5	270		97
GenBank mRNA	AB208816.1	-	7 - 8	451		97
	AK296919.1	-	6 - 7	406		97
	AK297879.1	-	5 - 6	265		97
	AK298541.1	-	5 - 6	353		97
	AK299384.1	-	5 - 6	257		97
	AK299402.1	-	5 - 6	333		97
	AK300624.1	-	4 - 5	267		97
	AK303900.1	-	4 - 5	271		97
	AK314290.1	-	4 - 5	268		97
	AK315146.1	-	4 - 5			97
	AL832174.1	-	4 - 5	269		97
	AL832349.1	-	4 - 5	272		97
	BC016066.1	-	6 - 7	587		97
	BQ420953.1	-	5 - 6	333		97
	CD702474.1	-	5 - 6	384		97
	D16217.1	-	5 - 6	346		97
	DC424542.1	-	4 - 5	284		97
	M86258.1	-	4 - 5	184		97

More Information

Updated Mapping Information

This assay targets the same location as Clariom D transcript cluster(s) TC0500013204.hg
This assay targets the same location as HTA transcript cluster(s) TC05000469.hg

Additional Information:

This assay is in the 5'UTR region of the AK315146.1 transcripts.

Set Membership:

Ambion siRNA available

Amplicon length between 86 and 100

Mammalian Gene Collection

Detect Genomic DNA

Homo sapiens

Probe spans exons

Matching Ambion siRNAs:

Click here to find siRNAs for Gene CAST

Panther Classification:

Molecular Function -

protein-binding activity modulator

protease inhibitor

Gene Ontology Categories:

Function(s) Process(es)

MicroArray Probes:

Affymetrix

Array Name	Probe IDs	Targets	Target Type
Affymetrix Human Transcriptome Array 2.0	PSR05006648.hg.1	ENST00000309190.5	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR05006648.hg.1	ENST00000325674.7	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR05006648.hg.1	ENST00000338252.3	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR05006648.hg.1	ENST00000341926.3	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR05006648.hg.1	ENST00000348386.3	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR05006648.hg.1	ENST00000359176.4	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR05006648.hg.1	ENST00000395812.2	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR05006648.hg.1	ENST00000395813.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR05006648.hg.1	ENST00000504465.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR05006648.hg.1	ENST00000508608.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR05006648.hg.1	ENST00000508830.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR05006648.hg.1	ENST00000509903.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR05006648.hg.1	ENST00000510756.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR05006648.hg.1	ENST00000511049.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR05006648.hg.1	ENST00000511782.1	Ensembl
Affymetrix Human Transcriptome Array 2.0	PSR05006648.hg.1	NM_001042440.4	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR05006648.hg.1	NM_001190442.1	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR05006648.hg.1	NM_173060.4	Refseq
Affymetrix Human Transcriptome Array 2.0	PSR05006648.hg.1	TC05000469.hg.1	HTA TC
Affymetrix Human Clariom D Assay	PSR0500193584.hg.1	ENST00000309190.9	Ensembl
Affymetrix Human Clariom D Assay	PSR0500193584.hg.1	ENST00000338252.7	Ensembl
Affymetrix Human Clariom D Assay	PSR0500193584.hg.1	ENST00000341926.7	Ensembl
Affymetrix Human Clariom D Assay	PSR0500193584.hg.1	ENST00000348386.7	Ensembl
Affymetrix Human Clariom D Assay	PSR0500193584.hg.1	ENST00000395812.6	Ensembl
Affymetrix Human Clariom D Assay	PSR0500193584.hg.1	ENST00000395813.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0500193584.hg.1	ENST00000421689.6	Ensembl
Affymetrix Human Clariom D Assay	PSR0500193584.hg.1	ENST00000504465.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0500193584.hg.1	ENST00000504532.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0500193584.hg.1	ENST00000505143.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0500193584.hg.1	ENST00000506811.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0500193584.hg.1	ENST00000508117.6	Ensembl
Affymetrix Human Clariom D Assay	PSR0500193584.hg.1	ENST00000508197.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0500193584.hg.1	ENST00000508608.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0500193584.hg.1	ENST00000508830.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0500193584.hg.1	ENST00000509903.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0500193584.hg.1	ENST00000510156.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0500193584.hg.1	ENST00000510756.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0500193584.hg.1	ENST00000511049.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0500193584.hg.1	ENST00000511097.6	Ensembl
Affymetrix Human Clariom D Assay	PSR0500193584.hg.1	ENST00000511782.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0500193584.hg.1	ENST00000512620.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0500193584.hg.1	ENST00000514055.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0500193584.hg.1	ENST00000514845.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0500193584.hg.1	NM_001042440.4	Refseq
Affymetrix Human Clariom D Assay	PSR0500193584.hg.1	NM_001190442.1	Refseq
Affymetrix Human Clariom D Assay	PSR0500193584.hg.1	NM_001284212.3	Refseq
Affymetrix Human Clariom D Assay	PSR0500193584.hg.1	NM_001284213.3	Refseq
Affymetrix Human Clariom D Assay	PSR0500193584.hg.1	NM_173060.4	Refseq
Affymetrix Human Clariom D Assay	PSR0500193584.hg.1	ENST00000309190.9	Ensembl
Affymetrix Human Clariom D Assay	PSR0500193584.hg.1	ENST00000338252.7	Ensembl
Affymetrix Human Clariom D Assay	PSR0500193584.hg.1	ENST00000341926.7	Ensembl
Affymetrix Human Clariom D Assay	PSR0500193584.hg.1	ENST00000348386.7	Ensembl
Affymetrix Human Clariom D Assay	PSR0500193584.hg.1	ENST00000395812.6	Ensembl
Affymetrix Human Clariom D Assay	PSR0500193584.hg.1	ENST00000395813.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0500193584.hg.1	ENST00000421689.6	Ensembl
Affymetrix Human Clariom D Assay	PSR0500193584.hg.1	ENST00000504465.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0500193584.hg.1	ENST00000504532.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0500193584.hg.1	ENST00000505143.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0500193584.hg.1	ENST00000506811.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0500193584.hg.1	ENST00000508117.6	Ensembl
Affymetrix Human Clariom D Assay	PSR0500193584.hg.1	ENST00000508197.1	Ensembl
Affymetrix Human Clariom D Assay	PSR0500193584.hg.1	ENST00000508608.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0500193584.hg.1	ENST00000508830.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0500193584.hg.1	ENST00000509903.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0500193584.hg.1	ENST00000510156.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0500193584.hg.1	ENST00000510756.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0500193584.hg.1	ENST00000511049.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0500193584.hg.1	ENST00000511097.6	Ensembl
Affymetrix Human Clariom D Assay	PSR0500193584.hg.1	ENST00000511782.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0500193584.hg.1	ENST00000512620.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0500193584.hg.1	ENST00000514055.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0500193584.hg.1	ENST00000514845.5	Ensembl
Affymetrix Human Clariom D Assay	PSR0500193584.hg.1	NM_001042440.4	Refseq
Affymetrix Human Clariom D Assay	PSR0500193584.hg.1	NM_001190442.1	Refseq
Affymetrix Human Clariom D Assay	PSR0500193584.hg.1	NM_001284212.3	Refseq
Affymetrix Human Clariom D Assay	PSR0500193584.hg.1	NM_001284213.3	Refseq
Affymetrix Human Clariom D Assay	PSR0500193584.hg.1	NM_173060.4	Refseq
Affymetrix Human Clariom D Assay	PSR0500193584.hg.1	TC0500013204.hg.1	Clariom D TC

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Catalog #	4351372
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Genomic Map